Gene detail

Detailed information of XP_058973107.2 in Pocillopora verrucosa

Genomic Location: chr3:2811321...2824820
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131799401

ATGGCCGACGACCCCAGTAGCGACGAACGAGAAGATATGGAGTTGGCAGAGGACGAAACCGGCCCGCCATTGAAATCCAAAGTTTTGAACGGAGATCATGAAATAGGAGAAACCAAGGTCAGTTCCACAGCTAGAAACACTTCTGTTAGCTCGAGTAGCGGTAAGAGTGGCAGGCACGTGGAAGAAAATGGCGAAATTGAAGGATCAGAGGAAGAAGTCGAGGAAGAAACAGGGGAATCGGAAGAGGAAAGCTCGAGCGAAGAAGAGTCATCTTCGGAAGAATCGTACAGCGACGATTCGGAGGAATCTGAGAGGCTCCAGCAAGCAGGGAAGATAGCTGAAGGTGAGCGCCCTCAGCATGGTTATGCTGCATCTAGTAAATCACTATTTGAGAGGAAAGCTCAAGAGGCAAGTGAAACAGGAACAGCTAGAATCAGACCCATAGAGCAAGAGAGAGACCTATTTGTGCCTACCAGTTCTCGACGCAGCACATTTGAGAAAGCAGCTGCAGATGAAGTAAAAAAGGTGACACCAAAAATCAAAGTGGAAGACGAGGAGGTTGACCTGTCAGGAAGAGCAAAATCTCATAAACAGCTCTTTGAGGAACAGGCCAGGCTAAGCGCCCAGGTGTCTCCATCTCTTCCGAGGAAAATATTTGGTGAGCAAGAAGGAGAAGTGGATATTTCTGGGAAGGCAAGATCAAAGAAAGAGTTGTTTGAAAAATATGCATCAGAGAATAAAGCAACATCACCCGGTGCAGAGAGAAGAATCCTTGGAGATGTAGACCTTTCAGGGCGAGCAAAAGCTCATCGCAATATTTTCCAACAAAAGATAGAGGAAGAGTCCCAAGTCAAAGCATCTCGCAAGTTTCATTTAGAGGAAGATGTCTTTTCTGGCAAGGCATCATCGCGACGTGCAATGTTTGAAAAATTTGGGTCATCAAATGATGGAAGTCAAAGGGGTTCTAAACGGGTGGAAGATGAGGAGATTGACTTGAGTGGACGAGCAAAGTCCCATCGCCAAAAGTTTGAGCAATTTGCTGAGGAAGCCTCCAAAGTCCAAACAGCTAGGTCCAAAAGTGATGAATTGGATCTTGTGGGAAAGGCGTCCTCACACAAAGAATATTTTGATGAAAAGGTTGTAGAGGCTGGCATGATCAAAACATCAGAAAAGAAGTTGAGAGATGAGGAGGAGGAAGCTATTGCTGGTAGAGCTCGATCGCACAAGATGACTTTTGAAGAGAAGGCTGCTAAAGATTTGGAAGTTCAAACTAGTGATAAATCAAGACTGCAAGAAATACCTGATAGAAGCACAAGGAAAAAAAGCAAGAAAGAGAAACATGGAGATGAACATGAGAAGAAGAAGAAGAGGCGCAGATCTTCATCAAAGTCCAAAGAACACAAAGAAATTGTGGCACATGGAGAAGCAACTCCAGAAGACAAGATTGAGAATGTGTTTGAAGAAGAAAAAGCTCAAGATGAAGAAGCAGAGGAGAGAGAAGGAGAGGCAAGGGAAGTCCTTGAGGATGACAACAATCATAAAATGAATGGTGAGGAACATGAATCAGATGAAGAGGAACAAATAGAAGTAAATGAGATGATTGAAAATGATTTTGGAGGTGAAATTACAGTCGCATCTTCAGATGTGTATGAGTCCAGTCCAGTTGATCTCCATGTTGAAGAAGACACCAATGATGGCAAGGAAGATGAAGAACATGAACCTAAACAGGTTGAAGATGAGCTTAAACCAGCCACATCTGTTACTATGCGTGATGATGGAGATGTCCCAATGGATTATCGTGCAAGGAGAGCTTTGAGAGAAAAGAAGAAAGCTATGGAGGAAGAAGCGAAAGGTAAGGATTCACAAGATGGCAAGGAAAAGGAAGTTGAGAAAAGTGAAGTTAAACCTTCAGAGGAAGAAAAATCTAAATCAGAAGAAGATGGAATGAAAGATCTGGCTACAAGAAGGGCTGAGAGAAGAGAAAGAAAAAGGCAGAGTGCACATGGTACTTCGGAGGATGATGCAGAAGCTCCATCAGATACCTCTTCTGCAAGGAGAACATCTTTAGCAGCTAGAAGGGCTGAACGAAGATTGAAAAGTGCTGGCAAGTCTGAGGAGACTGGTAATGTTGAGAAATCCACTAGTGTGGACAAAGTAGAAGAAGTGCAATCTACAATTGATGAGAAAAGAGCAGCGCGAAGAGCAGCGACAAGGGCTGCTGAGAAGGCAACAGAAAAGAAAGAGGAAGCCAAACCTGATAAGGAAGAAGAGAAGGAAGATGCATTGGCACGTAAGAGACAGGAGAGGAGAGAGAGAGCCGAGAGAAGGAGAAGCAGCAGTAAAAGTGAAGCAATACCTGTCGAAGCCTTAACTAAGAGAGGATCTACCTCAGAAGAAGACCAAACAAGTAATACTTCTGAGCAGAAGTCAACATACACAGCATCTGTGAAATCAAGATTTGAGAAGAAAGGAGGTGAAGAACAAACTTTGAGTACATCTCGAGTGAGAGATTCAAAGCCTTCAGAGGCTAAAACTGAGACTGTGTCAGCACGGAAACAATCAGGAGATAATCAGGTAAATCAACAGGAAAAGAGAGCACAAAGAAAAGAGAAAAATGATGAGATTGACAGTGTCAAATTGAAAGCAAGTGTCCAGGGAGAGAATAGTGGTTACAAGCCAAGAGGTGCAAGAGAAACTCTGAACAAGTTTGAGGGAAAAGAGAATACCAAAGATACAACTACTAAACCTGTTACTAGGACTAATCGCTTTGCACCACCTCAGCAAGAGAAATGTGAGACATGCACGAAGACTGTTTATCCAATGGAGAGGCTTGCTGCTGACAACAAGGTGTTCCATAAAACATGCTTTAAATGTGCTGAGTGCAAATCAACATTAAGACTTGGAAACTATGCTGCCCTACAAGGGAAACTTTATTGTAAACCGCACTTCAAACAGCTGTTCAAAACCAAGGGGAACTATGATGAAGGATTTGGCCGCGAACAGCACAAAACACAATGGACCAAGGGTAGATGA

Transcript

rna-XM_059117124.2

CATTTGGTATGATTCTAGAAcgtttctgattggccgttcgattgtttatttgttctcaCAAAAGTACTTGTAATAAGTTAGCGTTCATTTGCGTACTAATTCTGACTGAGGGCGTTCGTTCGTGTCCTCTGGCCTTGTGATATTATTCTCTGTGGAATTTTCCTGTCTTGTGCTTCTGTTTCAACTGAAGACGAAGAAGTATTAGTTTAGTTATGGCCGACGACCCCAGTAGCGACGAACGAGAAGATATGGAGTTGGCAGAGGACGAAACCGGCCCGCCATTGAAATCCAAAGTTTTGAACGGAGATCATGAAATAGGAGAAACCAAGGTCAGTTCCACAGCTAGAAACACTTCTGTTAGCTCGAGTAGCGGTAAGAGTGGCAGGCACGTGGAAGAAAATGGCGAAATTGAAGGATCAGAGGAAGAAGTCGAGGAAGAAACAGGGGAATCGGAAGAGGAAAGCTCGAGCGAAGAAGAGTCATCTTCGGAAGAATCGTACAGCGACGATTCGGAGGAATCTGAGAGgcTCCAGCAAGCAGGGAAGATAGCTGAAGGTGAGCGCCCTCAGCATGGTTATGCTGCATCTAGTAAATCACTATTTGAGAGGAAAGCTCAAGAGGCAAGTGAAACAGGAACAGCTAGAATCAGACCCATAGAGCAAGAGAGAGACCTATTTGTGCCTACCAGTTCTCGACGCAGCACATTTGAGAAAGCAGCTGCAGATGAAGTAAAAAAGGTGACACCAAAAATCAAAGTGGAAGACGAGGAGGTTGACCTGTCAGGAAGAGCAAAATCTCATAAACAGCTCTTTGAGGAACAGGCCAGGCTAAGCGCCCAGGTGTCTCCATCTCTTCCGAGGAAAATATTTGGTGAGCAAGAAGGAGAAGTGGATATTTCTGGGAAGGCAAGATCAAAGAAAGAGTTGTTTGAAAAATATGCATCAGAGAATAAAGCAACATCACCCGGTGCAGAGAGAAGAATCCTTGGAGATGTAGACCTTTCAGGGCGAGCAAAAGCTCATCGCAATATTTTCCAACAAAAGATAGAGGAAGAGTCCCAAGTCAAAGCATCTCGCAAGTTTCATTTAGAGGAAGATGTCTTTTCTGGCAAGGCATCATCGCGACGTgcaatgtttgaaaaatttgggTCATCAAATGATGGAAGTCAAAGGGGTTCTAAACGGGTGGAAGATGAGGAGATTGACTTGAGTGGACGAGCAAAGTCCCATCGCCAAAAGTTTGAGCAATTTGCTGAGGAAGCCTCCAAAGTCCAAACAGCTAGGTCCAAAAGTGATGAATTGGATCTTGTGGGAAAGGCGTCCTCACACaaagaatattttgatgaaaaggtTGTAGAGGCTGGCATGATCAAAACATCAGAAAAGAAGTTGAGAGATGAGGAGGAGGAAGCTATTGCTGGTAGAGCTCGATCGCACAAGATGACTTTTGAAGAGAAGGCTGCTAAAGATTTGGAAGTTCAAACTAGTGATAAATCAAGACTGCAAGAAATACCTGATAGAAgcacaaggaaaaaaagcaagaaagagAAACATGGAGATGAACatgagaagaagaagaagaggcgCAGATCTTCATCAAAGTCCAAAGAACACAAAGAAATTGTGGCACATGGAGAAGCAACTCCAGAAGACAAGATTGAGAATGtgtttgaagaagaaaaagctCAAGATGAAGAAGCAGAGgagagagaaggagaggcaaggGAAGTCCTTGAGGATGACAACAATCATAAAATGAATGGTGAGGAACATGAATCAGATGAAGAGGAACAAATAGAAGTAAATGAGAtgattgaaaatgattttggagGTGAAATTACAGTCGCATCTTCAGATGTGTATGAGTCCAGTCCAGTTGATCTCCATGTTGAAGAAGACACCAATGATGGCAAGGAAGATGAAGAACATGAACCTAAACAGGTTGAAGATGAGCTTAAACCAGCCACATCTGTTACTATGCGTGATGATGGAGATGTCCCAATGGATTATCGTGCAAGGAGAGCtttgagagaaaagaagaaagctaTGGAGGAAGAAGCGAAAGGTAAGGATTCACAAGATGGCAAGGAAAAGGAAGTTGAGAAAAGTGAAGTTAAACcttcagaggaagaaaaatCTAAATCAGAAGAAGATGGAATGAAAGATCTGGCTACAAGAAGGGCTgagagaagagaaagaaaaaggcaGAGTGCACATGGTACTTCGGAGGATGATGCAGAAGCTCCATCAGATACCTCTTCTGCAAGGAGAACATCTTTAGCAGCTAGAAGGGCTGAACGAAGATTGAAAAGTGCTGGCAAGTCTGAGGAGACTGGTAATGTTGAGAAATCCACTAGTGTGGACAAAGTAGAAGAAGTGCAATCTACAATTGATGAGAAAAGAGCAGCGCGAAGAGCAGCGACAAGGGCTGCTGAGAAggcaacagaaaagaaagaggaagcCAAACCTGATAAGGAAGAAGAGAAGGAAGATGCATTGGCACGTAAGAGACAGGAGAGGAGAGAGAGAGCCGAGAGAAGGAgaagcagcagtaaaagtgaAGCAATACCTGTCGAAGCCTTAACTAAGAGAGGATCTACCTCAGAAGAAGACCAAACAAGTAATACTTCTGAGCAGAAGTCAACATACACAGCATCTGTGAAATCAAGATTTGAGAAGAAAGGAGGTGAAGAACAAACTTTGAGTACATCTCGAGTGAGAGATTCAAAGCCTTCAGAGGCTAAAACTGAGACTGTGTCAGCACGGAAACAATCAGGAGATAATCAGGTAAATCAACAGGAAAAGAGAGcacaaagaaaagagaaaaatgatgagATTGACAGTGTCAAATTGAAAGCAAGTGTCCAGGGAGAGAATAGTGGTTACAAGCCAAGAGGTGCAAGAGAAACTCTGAACaagtttgagggaaaagagAATACCAAAGATACAACTACTAAACCTGTTACTAGGACTAATCGCTTTGCACCACCTCAGCAAGAGAAATGTGAGACATGCACGAAGACTGTTTATCCAATGGAGAGGCTTGCTGCTGACAACAAGGTGTTCCATAAAACATGCTTTAAATGTGCTGagtgcaaatcaacattaagACTTGGAAACTATGCTGCCCTACAAGGGAAACTTTATTGTAAACCGCACTTCAAACAGCTGTTCAAAACCAAGGGGAACTATGATGAAGGATTTGGCCGCGAACAGCACAAAACACAATGGACCAAGGGTAGATGAAACATGTAATGAGCAGCAAAGGAAAAACCCAATTGCATTCTAGATTTCATTACTGGTCATTCGCTTAAGAAATATTGATGTAGACTAATAGCAAGCAATTTAGGTCACTATAAATCCTTCAACTGTAGTTTCCTCTTTTGCCTCTTGCTTCCAAGAGGCAGTAATTAAACGCCGTCAGGAGGGAGCTATGTCAGCAACCAATCTTCCACCCCTTTCATTAAAAGAGAATCGAAATTCTTCTTAATGAGGAATTGGGCGATGGAGGATGTACAGTTGAAGTACTTTTATAATTGTGTGAATAGTAAACAGGAGatttttgaaatagttttgaTAATTTCACAGTAAAATTAATATCGTTGGATAATTTAAACAGTTTTCAGGGGCTGACATAACAATGACAGTGTGAGATCACTCGGATAGCTTGAATTATAAGTCACTGTAATATGTGAATTTTATGCTAAATAATGGAAGCTACAAGCTCTAATGAATTTTGCTATGAAGAGTACAAAGAATGAAAAGTGCGTGACATTTGTGCTTTGCATTTAGAGTATCGGGTTTAATATCTTTTGGTGAAAATCAAATCACTTTgtactgtaaatatttttggaaagaaaatttagcGTGGAGTTGATTACAGCATAATGTGCACTTGCACATTGACTGGTCACAGTTGTTTCGTAAATTTTGTTCGACCTGAAGTACTTGTAGCGGGTGGTATAGCACATAAAGAGGTATTTCATTAATCATTTGATTATTAATTTCAGTCAAGTTCAAGAAAATACTGGCTGACTTTTTTCAGGGAGTAAGTATTTGTGATCAGTGTTGCGTGACCCTTGCTACAGAAAAACATTGTTTGCGTCACGCAAGATCGATTAGTTTTCACCTGAAGTACACTCGTTGTGTTAGTCCCACAGAGGTTTGGTGAGTGCATCATTGGCCAGGTCATGACAAATTCGATTCTCCTCAGCATGTCtaaaatagtttattttgatCAGCAATAAATTGGAAATGATTTTTAGGAATAATTAAATCCTTGATCTGCGTCTTTTCTGGTGTGATTATGTTGAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00412 all species →	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24206 all species →	OS06G0237300 PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0051017 all species →	Biological Process	actin filament bundle assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_058973107.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.