Gene detail

Detailed information of XP_058973346.2 in Pocillopora verrucosa

Genomic Location: chr7:6522626...6528163
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_059117363.2

CATAAATCCAAGCTCATAGGAAAAATCCAAAATGTCGGCGTTCTTCTATACATATCATCGAAAGCTCCACTGTTTAAATGTAGATGACTACGTGgtggaaaatggaaaacagcTGAAAAAGATCGCATCGGATCTTTGTGGGGGTATACCAGAACAAGACTTGTCCGTGATCCATAATGGCCATCTTGTCACTGATGACAGAGAACTGCTACTTCAAGATGGAGACGTGTGCTATGCTAGTCTGCTTCTACCGGGTGGAAAGGGAGGGTTTGGTTCCATGTTACGCGCCATCGGAGCACAGATTGAGAAGACCACAAATAGAGAAGCATGCCGAGATCTGAGTGGAAGACGAATGAGAGACATAAATGACGAAAAAAAGATTGCTGAATGGGTTTCTAAACAAGCTGAAAGAGAGCGAGAGAAGGAACAAAAGAAACAGGAGAGGTTAGCAAGAAGAAGATCAATGCCAAAACACATGTTTGATGATAAGACATACACACAGAATATTCAGCAAAATTCAGAGAGAATAGAAGCTGCACTGCATCAAGggCTTAAAGCAGCTGGCAGTTCAAGATCATCAGGTGCTTCAAGCACTTCAGAGAAGGCAGCTGGAAAAAGAGTTCATCCAGAGGATCCTACAATTTCAGGAGGAGGGAAAAAAAGTAGATTGTGGCTGGGAATGGAAGACCTGTCAGACAGTGGTGATGATGAAGAAGGGATGGCTCCTGCCAGAAACAACAGTAATGAAGATCCAAGCAGGCACACATGCACTTCAACTGGTGTATCTTGTAGCAGCACTCAAGCAGAGGTTGCAGTCCCTGAAGAGGCTTCAGACAACAGACATTGTGTAGACACAGATTGTAAGATAGCAAAGCCACCTGCACAGCCatcagaaacaaatattgagtCACAGAAAGAAGACACAAAGACAGAGCATATTAGAGCAGCTGTTGCTGATACAAAAGATCAGAGAGAAGACTTTCAGGAAAAAGATGGAATGACAGGAACAGTTACCAAAggggaagaagaaaataaagctaCTGAAGAAGAGACCATTAGAAAGgtTGAGTTTTGCCTTGATAGCTACTCATCAGCAGAGGAGCTTGAATCCCTAGGATTGGAACATCTGAAGGAGGAACTAATGTCAAGGGGGCTCAAGTGTGGAGGGACATTACAACAGAGGGCTCAAAGGCTGTTTGCTACGAAAGGAGTCCCCATGGATCAACTGGATCCCTCTTTTTTTGCCAAGTCAACAGGTGGCAAAAAGTCTAATGGGAAAAAGTAACATGTAAAAGAGAACTGCACCTGGAATTCTGTTCTTAGTTATAATCCTGTCAAGTTCTTAGCATGGTATTTTGTTTATCTTGCAGTTGCATAAAGGCAGTTGTAtaaagggtttaaaaggttTCACAGCCATGAAGAAGTTACTTTATGTTTTACAACAGAACTAATTGATTTCGAAATGTATTTATTGTTTTCCTAATAATGTTATGCGTCTGTTACTTGAATTTTACATTGTATTTTCATTGctattacatgaaaaaattaatgatgctGTCACTTTTAAGTGCCTTAAACAAACCATTGTGTAAAATGCCAAATAAACatgacaaaacaaacacaatGGCATGGAGAATGAAAGGTTATAGGGAAGGTACTGTTACTGTAGTTACTTTAGCATCTGCTTCTTAGCTTTGAGCTAAGGGGTAGTCAGAGATACAGctaatatttctttcatttcctaaCAAAAGAGAGGCTATTCTCATGGTAGCAACTTTCTGGGGGTAAGCACTCTTGAGAAGTCACTATTTGCCAGATTCCATTTTATTCTTTAACTCCTTGACgtgattaatatgtaacttcCCCTTGGATTTTCATTACACTAATCCTTCAGACTGGGAATAAGAACAAATAAGGTTATTGGGTAGAGGGCAATGTCTCATTCTATTATGAAATTCCTTGGTCTTTTAAGCAAGGGATTGAATGACAGTTAGAATGGAAAGTTACTaatttgatcttgggagttgaaggttGATAGCATTTTTCTGATGCTGCACAAAAATTAAGAAtctacaattattttttttcatttcaattcacttttATTTGGGAAATATCTCAAGTTCAAGGTCACTCTCATAAGCTCATTTGACTCTTGATTATGTATAAAAATGTATTAAATGTATAAATTTTGAGcaatttgtaacttttttgtcTGTCATGTCTATTATGGAGACAACACTACAACAAAGTATGAACTGGAAAACTTGAAGGATTGATGTGTAACCAATTGTTTTCTTGCATAAAAAGGACTTTCacaggtttctttttgtttaccATCACATCTAGAAGAATGCAGTCTGGTGGTTTTTCTGTGTTTATGGAATACGCCAGTTTCCGCTTCTGTTTGGGTTTAGTCAATTTAACATCAGTTGTACAGTCCTTTGTAAGAAAATAGAAAGAATACAATATTCATTCAAAAGGCCTTTAGGCACACAAAGGAgatgttaacccttcaacttccacataagaccaagacagaattgtaccttaaaatatcaatacaatatcaagcagacaagtaatgagaataaagaaaaatattagttaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13297 all species →	SDE2_2C	Replication stress response SDE2 C-terminal	Domain	Interproscan
PF13019 all species →	Sde2_N_Ubi	Silencing defective 2 N-terminal ubiquitin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025086 all species →	Domain	SDE2-like, C-terminal domain	Interproscan
IPR051421 all species →	Family	RNA Processing and DNA Damage Response Regulator	Interproscan
IPR024974 all species →	Domain	Sde2, N-terminal ubiquitin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12786 all species →	SPLICING FACTOR SF3A-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25059	SDE2; replication stress response regulator SDE2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.