Gene detail

Detailed information of XP_065654997.1 in Hydra vulgaris

Genomic Location: NC_088925.1:1167796...1182938
NR annotation: XP_002160996.1, filamin-C [Hydra vulgaris]
Species abbreviation HVULG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC100204239

ATGAGAAAAAAGAAAAACTTAGATGAGCAAAAATCGTTTCGTTCACAGGATTCTCAAATTCAAGAAAAAGCATTTATTCGTTGGTGCAACCTTTTTTTAAAATCAAAAGGGTTTGAAATCGATAAAATCATTGATCTTCAAGATGGGGTTTATTTGATTATCTTGCTTGAAATATTAAGCGGGAAAAAGTTACAAGAAAATATTATCGACGGAGATGAAGATTATGTGAATAATTGGAAAATTATTTTAAAACATTTGGAAAATGAAGGAATTTCAATTTTAAATCCAGTTGATAATAATGACGAAGCAAGTATTATTCAATCGCTTACTTTTATTCTTTGGGAAATCATTTTAAGGTATCAAATCTTTGATGAAACAATTACAGATATGACGTTATTAAACGTGGACTATAATCGCGTTTCTAGAAATCTACTTAAATGGGTTCAATCTAAAATTCCAAATTGTCGCATAGAAAACTTTACGAGCGATTGGACAGACGGTATTGCATTATGTCTTTTAGTTAACGCAATACGCCCGGATACAATACCACAAACTATGTTTCAGAATAAGTATAACCCAGAAATGAACGTTCGTTTGGCTTGTACAACTGCAGAAGATGAACTTGGTATACCTGAATTAATTGCACCTTACGATATTGCAAACGGAAATGTGGACGAGAAGTCTATGATAACATACATAGCAATATTTCGTAGTGCAGATAGAATGGTTCGGCGAGGAATAAAAACAAAAACATATACGAGTGACTTTAGCATGTCGGAAAGCGAAACTGAAAGCATATTTGATAAAGATGGAAGCAAAGCGCTTCAAAAAAAACTTGGAATACCATATAAGTCTCCTAGATGTTTAGCATTTGGTGCTGGTTTACGTTGGGGGCAGGTTGGACGACCAACTGATTTTATTGTGAGGTTAAATGGAGCACAAGCAAGTGATCTATCTGTTTCAATAGAATGTCGCCCTTACGATCATAGAGTTGCTCTATATAAACCTGAACTTCAAATAAAACCTATAGAAGAATCAAGCTACATTGTAAGATACACACCTACTCGTCCTGGAGAATATGTACTTAGTATTTTTTGTGGAGGAGATCATATAGAAGACAGCCCTTTTCGACTTAGTGTGCGAGAAACAGTCTTAATGCCAAACCGTCTATCCGACGAAGAAATCAATATAAATCTTGATCAAGAAAATATACAGTTAACCACTAAAACATTGACAAATTGTTTAGAAGAAAACGACTCGAAAAGCAATTTTTCCGAAAATTTAGATTCAAAATCAACGGATATCAAGTCCGCACCATCCTGGCTCGATAAGCAAACTCGCGATATTTATAGAAAACTGGGAAAATTTATAAACCAAGAAACTGCCACAATGAAGGCATATGGCAAAGGGCTTATGAGCGGCGAAGTAGGCGTGGTTAGTGCATTTAATGTTTCGACGCCAAATACAGAGCGCGGTCCTTTAAGCGTATGCATTACATGTCCAGCAATGTCAATACCAGTACCTTGTGTTAAAACTAAACTGCAACCTACATCTTTGTTACATGAAGTATTGTACACACCTACAGAACCAGGGATTTACGAAATAGAAGTTTTTTGGAGTGAAAAACCTATACCCGGTAGCCCGTTCCGTTTAACTATCAACGATGCGGAAAAAAAAGAAGTTAACCTTACTGAAAATTCAAATAAGTTAAAAGAATATTGTCGATCTAAAAATGATATAACCAAGACAGATGAAGTAAAAATTTACTATAGCGCAACTTCAAAAAACATAATGGATCATTATTGCAAAGATCAGATGGTTCAAGTTGCGAAAGAAAATATATCTGAAAATGTACTTTTGATAGCTGCTGATTTGGAGTTAAACTCAAGTGAAAGAAAAGTGTTGTACGAGAAAACAAACTTTAAACAACTGCCGCTTTTGTTTTTGAACGAAGAATTCTTAGGTGATTATGATGAGGTCATGGACGAACATACGAAACAAAACTTATAA

Transcript

rna-XM_065798925.1

tcttttaatttgaaaacaGATGGTTTTTTAATTCgcgttttaagttttaattataaaaatttttatagaattagttttttattatacaagCCATTTCCTGACTCTTATgcgaaaatacaaaaattataaggaaaaaaacatagcgcaaagaaaaaagttgttattgtTCTGACTCGACCTTTCTTATAATTTACAGcaataaaatgagaaaaaagaaaaacttagaTGAGCAAAAATCGTTTCGTTCACAGGATTCTCAAATTCAAGAAAAAGCATTTATTCGTTGGtgcaacctttttttaaaatcaaaagggTTTGAAATCGATAAAATCATTGATCTTCAAGATGGGGTTTATTTGATTATCTTGCTTGAAATATTAAGCGGGAAAAAGTTACAAGAAAATATTATCGACGGAGATGAAGATTATGTGAATaattggaaaattattttaaaacatttggaaaatgaaggaatttcaattttaaatccagttgataaTAATGACGAAGCAAGTATTATTCAATCGCTTACTTTTATTCTTTGGGAAATCATTTTAAGGTATCAAATCTTTGATGAAACAATTACAGATATGACGTTATTAAACGTGGACTATAATCGCGTTTCTAGAAATCTACTTAAATGGGTTCAATCTAAAATTCCAAATTGTCGCATAGAAAACTTTACGAGCGATTGGACAGACGGTATTGCATTATGTCTTTTAGTTAACGCAATACGCCCGGATACAATACCACAAACTATGTTTCAGAATAAGTATAACCCAGAAATGAACGTTCGTTTGGCTTGTACAACTGCAGAAGATGAACTTGGTATACCTGAATTAATTGCACCTTACGATATTGCAAACGGAAATGTGGACGAGAAGTCTATGATAACATACATAGCAATATTTCGTAGTGCAGATAGAATGGTTCGGCgaggaataaaaacaaaaacatatacgAGTGACTTTAGCATGTCGGAAAGCGAAACTGAAAGCATATTTGATAAAGATGGAAGCAAAGCgcttcaaaaaaaacttggaatacCATATAAGTCTCCTAGATGTTTAGCATTTGGTGCTGGTTTACGTTGGGGGCAGGTTGGACGACCAACTGATTTTATTGTGAGGTTAAATGGAGCACAAGCAAGTGATCTATCTGTTTCAATAGAATGTCGCCCTTACGATCATAGAGTTGCTCTATATAAACCTGAACTTCAAATAAAACCTATAGAAGAATCAAGCTACATTGTAAGATACACACCTACTCGTCCTGGAGAATATGTACTTAGTATTTTTTGTGGAGGAGATCATATAGAAGACAGCCCTTTTCGACTTAGTGTGCGAGAAACAGTCTTAATGCCAAACCGTCTATCCGACGAAGAAATCAATATAAATCTTGATCAAGAAAATATACAGTTAACCACTAAAACATTGACAAATTGTTTAGAAGAAAACGACTCGAAAAGCAATTTTTCCGAAAATTTAGATTCAAAATCAACGGATATCAAGTCCGCACCATCCTGGCTCGATAAGCAAACTCGCGATATTTATAGAAAACTGGGAAAATTTATAAACCAAGAAACTGCCACAATGAAGGCATATGGCAAAGGGCTTATGAGCGGCGAAGTAGGCGTGGTTAGTGCATTTAATGTTTCGACGCCAAATACAGAGCGCGGTCCTTTAAGCGTATGCATTACATGTCCAGCAATGTCAATACCAGTACCTTGTGTTAAAACTAAACTGCAACCTACATCTTTGTTACATGAAGTATTGTACACACCTACAGAACCAGGGATTTACGAAATAGAAGTTTTTTGGAGTGAAAAACCTATACCCGGTAGCCCGTTCCGTTTAACTATCAACGATGcggaaaaaaaagaagttaaccttactgaaaattcaaataagttaaaagaatattgtcgatctaaaaatgatataacCAAGACAGATGAAGTAAAAATTTACTATAGCGCaacttcaaaaaacataatGGATCATTATTGCAAAGATCAGATGGTTCAAGTTGCGAAAGAAAATATATCTGAAAATGTACTTTTGATAGCTGCTGATTTGGAGTTAAACTCAAGTGAAAGAAAAGTGTTGTACgagaaaacaaactttaaacaaCTGCCGCTTTTGTTTTTGAACGAAGAATTCTTAGGTGATTATGATGAGGTCATGGACgaacatacgaaacaaaacttataaactagtaaaattttaatttctggCAACAGCATAAATTGCAATAGtcaattaatgtatttttttttaggcaaaaaaaaatgatggtTCCAATTTCTTTTTTGCGTACCATTCTACTTTTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VHX6	Filamin-C OS=Mus musculus OX=10090 GN=Flnc PE=1 SV=3
D3ZHA0	Filamin-C OS=Rattus norvegicus OX=10116 GN=Flnc PE=1 SV=1
Q14315	Filamin-C OS=Homo sapiens OX=9606 GN=FLNC PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005456 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR001589 all species →	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR044801 all species →	Family	Filamin family	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR38537 all species →	JITTERBUG, ISOFORM N	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065654997.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.