Gene detail

Detailed information of XP_065657224.1 in Hydra vulgaris

Genomic Location: NC_088926.1:14777736...14821201
NR annotation: XP_002156370.2, pumilio homolog 3 isoform X1 [Hydra vulgaris]
Species abbreviation HVULG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15397	Pumilio homolog 3 OS=Homo sapiens OX=9606 GN=PUM3 PE=1 SV=3
Q562C7	Pumilio homolog 3 OS=Rattus norvegicus OX=10116 GN=Pum3 PE=2 SV=1
Q8BKS9	Pumilio homolog 3 OS=Mus musculus OX=10090 GN=Pum3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005804 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08144 all species →	CPL	CPL (NUC119) domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR001313 all species →	Repeat	Pumilio RNA-binding repeat	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR040059 all species →	Family	Pumilio homologue 3	Interproscan
IPR012959 all species →	Domain	CPL domain	Interproscan
IPR033133 all species →	Domain	Pumilio homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13389 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006417 all species →	Biological Process	regulation of translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14844	PUF6; pumilio homology domain family member 6	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.