Gene detail

Detailed information of XP_065660125.1 in Hydra vulgaris

Genomic Location: NC_088927.1:59483701...59540670
NR annotation: XP_047143267.1, selenocysteine insertion sequence-binding protein 2-like isoform X1 [Hydra vulgaris]
Species abbreviation HVULG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC101236860

ATGAGTTCTGATTTATCAGCATCTGCTATAGAGTTTGTGCCACAAACGTATCGAGTTCCTTTATTGTCTGCAAGTGCCCCTGAGTTTATACCAGAAAAAAATAAATTTTCACCTCAAAATAATGACGGTATTAAAACGAACCATAATTTTAAATGCTCCAAATCAATCAGTAGTTATAGCACTCACAGTCAATATAGTTCTTTCCAAAATGCATCGAATAATAAGAATAAAAATTTAAATGATTTTATCAATACCAAAGACTTAGCAAATACACAAGACCAAATGAATACAGAAGATTTTATGAAAGCAAACCAATATACAAATATTCACAACAACAAAAATGAAAACAAAAATTTAAACAAAACTGAAATAATAAAGTCTAACAAAAACTTAAATTCTGTCTCAGTTAATACAAAAGGCCAACCACAAGCTAAAGATTTACAAATAAAAACAACAAAAAAAGAAACAAAAGCAATTTGTTCTACAACTCTTTCTGCAATTAAAAATGAACAACCAAAATTATCTTGGAGTTCAATTGTTAAAAAGACGCCTAATGAAAGTTTAGAAATAGAAAAATCAACAAAAGCTCTTACAGGTGTAAAAGCTCCAGTGACAGAGGAAATAACTGGAACACAGCAGAATTATTTTAAAAAGAAAAAAAATTATACTAATATCAAAAATAACATTACATCTGAACTCGATCAACTAAAGTCTGAGCATAATTCAGATTTAAAAGTTAATTTTTGTTCTCAGAATGAAAGAAAAAATATTTCACAAAAGGACAATGGTTTGGATGAAAACATACCTCAGAGACAAAACTTGGAGAACATTGTTTCTCAAAGTCAAACCTTACTGACAGAAAAAAATACAAGTTCATCTTCTTTGCTTAAAAAGACAAATAAAAAAAAATCTTCTAATCTAAGGGTATCTTTTGAAAGTAATTTGTATAAAAATGAAGACAAATTTACAGGTGACGTTGTTGCTAAAAATAGATCTTCAAAGAAGTTAATAGACTTTCAAGCAATCCAAACTTCAAATCCTGAATCAGAAGAAAAAGTTTGGTTAAAAGAAATGTCACACAGTGCGACTGTTGATGCTTCATTTCCATCCACACTGACATCTAATGTAGCAACCCCTTTATCTTACAGTTCAATTGTGAAGAAAATACCTGTTTCACCCATTACGCCTATAAAAAACTGTGTAGACGATGAAAAACCAACATCAACACAGTTATCCCCTGAGGAGCGTAAAAAAAGGCTTAAAGAGAAAAAGTTGAAGCGAAAGCTAAAAGTAAAAGAGAAGAAAGCTAGGCTCGCTAAAGAAAATCCTAAAGTGATTGAAGTTTCAAAAAAATCTTCAAAAAAAGAAGTTATGCTTGACTTTGGCTGTTTGTTGGACCAATTAAATTCTCAGAAGGATATTAAGAAACAACGAAAAGTTGTTTCAATAGGAGTGATATCAGTTGTTAGTGGATTAGCAAAAAGAAATACTTCAGACGGAAAAAGAAAAACAAGAGATAAGGGTGGAGCTTCTTCAGAGGGTCTTCGTATAAAACGTGGGAAAATGCGAGAAACACCCAAAAAAAAGAAGCCTACTCTTCTTAAAAAAATTATAAAACTTGAACGAGAAAGAAAACGATTAATTAATGCAGCAAAACAAGAGCCTGTACAAGAAAAACAATCTGTAGAGTCTACTGATTTGTCAGCAACTGAGAAATTGGAATTGTTTCAAAAAGAGGATTCCAAAATTGATATAGTTAAAGAACCTCATCTCATAGAAGATAGCTGTCCTAATGTTTGTCAAGATTCTAATGGTCCGACAGATTTCCAAATTGATACTGTTTGTCAAAATACTTCTGAAAGGAAAGTATCAGATCCAAATGTAACAAAGCTTTGCAGTCTGCCTGATTATGTCAGAGAAAAAATCCACTCAAGAAAGTTTCGAGAGTATTGCAATCATCTCCTCAGCGATGAAATCAACAACCTGACACAATCACTATTATTGGATCTAATCAAATATCAAGACAGAGTTTACCATGAGAATCGAACCAAATTCAAACAAAAGAGACGGTATGTGCTGGGTCTTAGAGAAGTTCTCAAACATTTAAAAGTGAAAAAATTGAAAGCTATTATTGTTGCACCAAACATCGAAAGAATTTCTTGTGAAGGTGGAATTGACGACTACTTAACAAACATCTTAAGTCTGTGTAATGAAGATAGCATTCCAGTCATCTTTGCAATGAACAGACATACTTTAGGTAAAACCATGAAAAAGAATGCTCCTGCAAGTGTTGTCGGTATTTTTAGCTATGATGGCGCTCAGGATAAGTTTAAAGAACTCATGCTACTTGTCGAAAAAGCTCGCATGGATTATAAAAACAAAGTGAAGCTAACAACTCAGCAATTTATTACAAATGACTTTATATCGAAAGAAGTTGAAAGAAATGAGAACAAAACTCATGATAAAACTGAAGTTAAATCTGGACGACACCGACAACTCAACCCTCACCGCAATGAACAAACGTATTTTATTTACCCCTCTGCTCGCCTTTATCAAGGTCATCAAGGATATCGTCCAATAAAAAATAACTACAATAGTTACACGCCTGGTCAAACAAACTATTATTACCATTCACCGCCCCCCTCTGTCATTCATTCATCCATTCATTATAATCGTTCTTTGCATAATGTTGAATCGCATATGAATCCTTCTTTACAAATAACTGAAGCAGAATATCTAAAAAAGCAGATTTTAGAAAAATTTTATTCTTAA

Transcript

rna-XM_065804053.1

tccaatttaaatttaaatttaattattttagtagaAATACAATTCAGTTATGAGTTCTGATTTATCAGCATCTGCTATAGAGTTTGTGCCACAAACGTATCGAGTTCCTTTATTGTCTGCAAGTGCCCCTGAGTTTAtaccagaaaaaaataaattttcacctCAAAATAATGACGGTATTAAAACGAACCATAATTTTAAATGCTCCAAATCAATCAGTAGTTATAGCACTCACAGTCAATATAGTTCTTTCCAAAATGCATcgaataataagaataaaaatttaaatgattttatcaaTACCAAAGACTTAGCAAATACACAAGACCAAATGAATACAGAAGATTTTATGAAAGCAAACCAATATACAAATATtcacaacaacaaaaatgaaaacaaaaatttaaacaaaactgaaataataaagtctaacaaaaacttaaattctGTCTCAGTTAATACAAAAGGCCAACCACAAGCTaaagatttacaaataaaaacaacaaaaaaagaaacaaaagcaATTTGTTCTACAACTCTTTCTGCAATTAAAAATGaaCAACCAAAATTATCTTGGAGTTCAATTGTTAAAAAGACGCCTAATGAAAGTTTAGAAATAGAAAAATCAACAAAAGCTCTTACAGGTGTAAAAGCTCCAGTGACAGAGGAAATAACTGGAACACagcagaattattttaaaaagaaaaaaaattatactaatatcaaaaataacattacatCTGAACTCGATCAACTAAAGTCTGAGCATAATTcagatttaaaagttaatttttgttctcagaatgaaagaaaaaatatttcacaaaaggACAATGGTTTGGATGAAAACATACCTCAGAGACAAAACTTGGAGAACATTGTTTCTCAAAGTCAAACCTTACTGacagaaaaaaatacaagttcaTCTTCTTTgcttaaaaagacaaataaaaaaaaatcttctaatCTAAGGGTATCTTTTGAAagtaatttgtataaaaatgaaGACAAATTTACAGGTGACGTTGTTGCTAAAAATAGATCTTCAAAGAAGTTAATAGACTTTCAAGCAATCCAAACTTCAAATCCTGAATCAGAAGAAAAAGTTTGGTTAAAAGAAATGTCACACAGTGCGACTGTTGATGCTTCATTTCCATCCACACTGACATCTAATGTAGCAACCCCTTTATCTTACAGTTCAATTGTGAAGAAAATACCTGTTTCACCCATTACGCCTATAAAAAACTGTGTAGACGATGAAAAACCAACATCAACACAGTTATCCCCTGAGGAGCGTAAAAAAAGGCTTAAAGAGAAAAAGTTGAAGCGAAAGCTAAAAGTAAAAGAGAAGAAAGCTAGGCTCGCTAAAGAAAATCCTAAAGTGAttgaagtttcaaaaaaatcttcaaaaaaagaagttatgCTTGACTTTGGCTGTTTGTTGGACCAATTAAATTCTCAGAAGGATATTAAGAAACAACGAAAAGTTGTTTCAATAGGAGTGATATCAGTTGTTAGTGGATTAGCAAAAAGAAATACTTCAGacggaaaaagaaaaacaagagaTAAGgGTGGAGCTTCTTCAGAGGGTCTTCGTATAAAACGTGGGAAAATGCGAGAAACACCCAAAAAAAAGAAGCCTACTcttcttaaaaaaattataaaacTTGAACGAGAAAGAAAACGATTAATTAATGCAGCAAAACAAGAGCCTGTACAAGAAAAACAATCTGTAGAGTCTACTGATTTGTCAGCAACTGAGAAATTGGAATTGTTTCAAAAAGAGGATTCCAAAATTGATATAGTTAAAGAACCTCATCTCATAGAAGATAGCTGTCCTAATGTTTGTCAAGATTCTAATGGTCCGACAGATTTCCAAATTGATACTGTTTGTCAAAATACTTCTGAAAGGAAAGTATCAGatCCAAATGTAACAAAGCTTTGCAGTCTGCCTGATTATGTCAGAGAAAAAATCCACTCAAGAAAGTTTCGAGagtatTGCAATCATCTCCTCAGCGATGAAATCAACAACCTGACACAATCACTATTATTGGATCTAATCAAATATCAAGACAGAGTTTACCATGAGAATCGAACCAAATTCAAACAAAAGAGACGGTATGTGCTGGGTCTTAGAGAAGTTCTCAAacatttaaaagtgaaaaaattgaaaGCTATTATTGTTGCACCAAACATCGAAAGAATTTCTTGTgaagGTGGAATTGACGACTACTTAACAAACATCTTAAGTCTGTGTAATGAAGATAGCATTCCAGTCATCTTTGCAATGAACAGACATACTTTAGGTAAAACCATGAAAAAGAATGCTCCTGCAAGTGTTGTCGGTATTTTTAGCTATGATGGCGCTCAGgataagTTTAAAGAACTCATGCTACTTGTCGAAAAAGCTCGCATggattataaaaacaaagtgaAGCTAACAACTCAGCAATTTATTACAAATGACTTTATATCGAAAGAAGTTGAAAGAAATGAGAACAAAACTCATGATAAAACTGAAGTTAAATCTGGACGACACCGACAACTCAACCCTCACCGCAATGAACAAACGTATTTTATTTACCCCTCTGCTCGCCTTTATCAAGGTCATCAAGGATATCgtccaataaaaaataactacaatAGTTACACGCCTGgtcaaacaaactattattaCCATTCACCGCCCCCCTCTGTCATTCATTCATCCATTCATTATAATCGTTCTTTGCATAATGTTGAATCGCATATGAATCCTTCTTTACAAATAACTGAAGCAGAATATCTAAAAAAgcagattttagaaaaattttattcttaattgctgttttaaatgaattttttaaaaaagttacctTTTATCATTATGTCCTATATGATATATTGATGATAGCTTTGTATAACCCAGATGTGTAATGATTTTGAGAATATAGCTGAATAAAACTTCTTCGTTTAAAAAAGTgtcaatttcaaaagttttttcaaaagaaacgAAAAGAAGCTGAGTTGATTGATTTCAATGCtgtgtatttattattatgtgtatatatatataatatatttttttttgcagttgtttt

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q96T21	Selenocysteine insertion sequence-binding protein 2 OS=Homo sapiens OX=9606 GN=SECISBP2 PE=1 SV=2
Q3U1C4	Selenocysteine insertion sequence-binding protein 2 OS=Mus musculus OX=10090 GN=Secisbp2 PE=2 SV=1
Q9QX72	Selenocysteine insertion sequence-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Secisbp2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005527 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01248 all species →	Ribosomal_L7Ae	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029064 all species →	Homologous_superfamily	Ribosomal protein eL30-like superfamily	Interproscan
IPR040051 all species →	Family	Selenocysteine insertion sequence-binding protein 2	Interproscan
IPR004038 all species →	Domain	Ribosomal protein eL8/eL30/eS12/Gadd45	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13284 all species →	GH01354P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001514 all species →	Biological Process	selenocysteine incorporation	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0035368 all species →	Molecular Function	selenocysteine insertion sequence binding	Interproscan
GO:0043021 all species →	Molecular Function	ribonucleoprotein complex binding	Interproscan
GO:1990904 all species →	Cellular Component	ribonucleoprotein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19539	SECISBP2, SBP2; selenocysteine insertion sequence-binding protein 2	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.