Gene detail

Detailed information of XP_065663090.1 in Hydra vulgaris

Genomic Location: NC_088929.1:351527...380296
NR annotation: XP_047141973.1, RING finger protein 10 isoform X1 [Hydra vulgaris]
Species abbreviation HVULG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC100204268

ATGCATCATTCTAACGGACAAGTCCAAAATCAACCTATACATCATCATGTAAATCGATGGACTCCTGGACTTAGCTTAGAGTATGAAACTGAAAAAACTAGATTTAAAGGAAGAATTTTCAATGGTTTAGTACCAGCTCCAAATCGTAATGTTACCAAGTCTGTCAGACAGAGCTATAATTGTGCAAAAAAAGATCAGTCTTACACAAAAAATTTAAAAAAACTGGATTCATCTGAACCTCTTGTTAAAGAGATTTCTAATGGTGGTGTTTCTTCTTCATTGAGACTTTTGAATTTTCATTATTCCAGTCCATCATCGAATTCAATGCAGAAAAACCAATCAAGCAATTACAGAAAGAAAAGAACTGCAACATTTAATAAAGAAGTTTTTTTGCAATCGAACTGCTATTTTGTTGTTGATAATGTTCCTGACAAGTATCTTGTTAATGGAGTGGATCCAGATGTTTTAGTTGCCTGGGAAACTATTAGACTTGTTTACTTGCCAACACATGAAATACCTAGTTGCCCAATATGCTTGTACCCCCCAACAGTGGCAAAAATAACGCGATGTGGTCATGTTTTTTGTTGGAGCTGCATTCTCCATTATTTGCAGCTGACTGATAAAACATGGAGAAAATGCCCAATCTGTCATGAAGCAGTGCATGATGCAGATTTAAAAAGTGTTGTGAATGTTATCCAAAAGAAATTTGCAAGACATGAAAATATCACAATGAAGTTAATGAAGCGACAAAAAAGTTCTTTGTTTACCTCAACAAAAAGTGAAAAAATATCATCTGATGAATCTTTCTCTTTTTGGAATGGATTGTTTTTAAAGTTTGGAAGTAAACTTATGTTGGCAAACAAAGATTCTGTTGTTGAAAAAATTATGTTACCAGAAAAACTTCAGTTGGAAAATCAACTAATACAGGCAATTGCAGATGAGAGTGGTGAAGACTGTTTTATTCAATTAGCTTTAGTGAAAGTCAAGAAAGCAATAGAAGAAATAAAAATTGATAATGAACTTACTGAAACTTTGAATATAACACATACTGTTGATGACAATGACGTCTTTGTTCCCTCTCAAGAATCAAGTTTGGCATTTATTCTTTCTCAAGCTAAGGTTGATGACAGTTATGAATTACCTTTTGCCAATAATGACAGTGAAATCAAATTTGAAAATACAAATATAGTTAAGGAAAATTCAGATTGTCAAGCATCATTACAATGGAATAATGAAACTGATGAACAATTGTCATATAATACAAAACCAAGCAAAAAAATAATTGATGAACAGGTTGAGCACTATGTTGATAAACCATCTGAAAGATTTGATGATTTTTACTACTTTTATCAAGCTGAAGATGGTCAAAATATATATATTGATGCACTCAATGCAAGATGTTTAATAGAAGAGTATGGATCCTTATGTAATGCTCCAACCACCATTACAGGCCAAATTTTAGATTTTGAATCGTTTACTATGAGTTTGGAACATCGTAAGCGTTTTAGATATTTGAGTCATTTACCACTAGCGTGTGAATTTTGCATTTGTGAGTTGTTACTAAGACCACCAGTTTTGTCGAAAAGCACAATACATAATTTTATGCCAGAGTTTAATAAAAGAAAGTCAATTCGCTCAAAGAAGTTAGAGGAACAGAGAAAATTTGATCGTAAAGCTTCTAACGCAAGAAATAAAGAATTTGGCTATCAATGTGTTGATGATTGTCCGACAAGTAATATTGATTTAGCAGATCTTGATAATTTTCCTTGCAGCTTTTCTCCTACAACTGAATCGATCAATCAAAATTCATTTTATAATGAAGCAATTGCAGATGAAAACAATGGTTTAGGAAAACCTGGTTTGTCTTTTGCTCAAATGTTGAAAGTAAAACAACCAGATGACGCGATGTTTCAAAAGCCAAACATTCATCTAACAAACAAAAGTGATACATTAACACGCAACTTATCTGTCTTACAAGATAATGAATGTGAAATTTCAACACCTACCTTTAAAGAAATGTTTAATGCTGCAATTTCAGCGACTTCTTTAAAATGTTTAGATTCAACTAAAGAAAATAATTCTAAAAAGAAAAAGCAAAAAGGGGTTTTACTATTTTCCACAGGTGCTCAAAGAAAATACTAA

Transcript

rna-XM_065807018.1

ttttttaaacgttaccAAATCTAACATTTTTTCTGCGTCTTCCGCTTTGCTCTGACGTTATTTTCTGCACTTTAGTTGGAGAAACTTTTGTCTccaacttaaattttattaacatcatcagctatatttaaaaaattttataaaaaataactagatACTAACATTAAAACCAAATTACTGTTGTTGTAGAATCATGGAGTGCTAAAGATGAGCAACAACATTGTAAATTATAATGAAGCAACGCCTTACTTGGCTATAATTGAAGAcatttgttgtaaatatttagGCAGCTCTCATTTCTGCCTATTTTGGCTGgagagtttattattttatgatagGAAAAATTTAAGCAGAGAAATTACGACTTTCAGTCAATCTAAAGATATAAAAGATGCATCATTCTAACGGACAAGTCCAAAATCAACCTATACATCATCATGTAAATCGATGGACTCCTGGACTTAGCTTAGAGTatgaaactgaaaaaactaGATTTAAAGGAAGAATTTTCAATGGTTTAGTACCAGCTCCAAATCGTAATGTTACCAAGTCTGTCAGACAGAGCTATAATTGTGCAAAAAAAGATCAGTCttacacaaaaaatttaaaaaaactggattCATCTGAACCTCTTGTTAAAGAGATTTCTaaTGGTGGTGTTTCTTCTTCATTGAGACTTTTGAATTTTCATTATTCCAGTCCATCATCGAATTCAATGCAGAAAAACCAATCAAGCAATTACAGAAAGAAAAGAACTgcaacatttaataaagaagtttttttgcaATCGAacTGCTATTTTGTTGTTGATAATGTTCCTGACAAGTATCTTGTTAATGGAGTGGATCCAGATGTTTTAGTTGCCTGGGAAACTATTAGACTTGTTtacttGCCAACACATGAAATACCTAGTTGCCCAATATGCTTGTACCCCCCAACAGTGGCAAAAATAACGCGATGTGGTCATGTTTTTTGTTGGAGCTGCATTCTCCATTATTTGCAGCTGactGATAAAACATGGAGAAAATGCCCAATCTGTCATGAAGCAGTGCATGATGCAGATTTAAAAAGtgtTGTGAATGTTATCCAAAAGAAATTTGCAAGACATGAAAATATCACAATGAAGTTAATGAAGCGACAAAAAagttCTTTGTTTACCTcaacaaaaagtgaaaaaatatcATCTGATGAATCTTTCTCTTTTTGGAATGgattgtttttaaagtttggaAGTAAACTTATGTTGGCAAACAAAGATTctgttgttgaaaaaattatgttaccAGAAAAACTTCAGTTGGAAAATCAACTAATACAGGCAATTGCAGATGagagtggTGAAGACTGTTTTATTCAATTAGCTTTAGTGAAAGTCAAGAAAGCaatagaagaaataaaaattgataatgaaCTTACTGAAACTTTGAATATAACACATACTGTTGATGACAATGACGTCTTTGTTCCCTCTCAAGAATCAAGTTTGGCATTTATTCTTTCTCAAGCTAAGGTTGATGACAGTTATGAATTACCTTTTGCCAATAATGACAGTgaaatcaaatttgaaaatacaaatatagttaAGGAAAATTCAGATTGTCAAGCATCATTACAATGGAATAATGAAACTGATGAACAATTGTCATATAATACAAAaccaagcaaaaaaataattgatgaacAGGTTGAGCACTATGTTGATAAACCATCTGAAAGATTTGAtgatttttactacttttatcAAGCTGAAGAtggtcaaaatatatatattgatgcaCTCAATGCAAGATGTTTAATAGAAGAGTATGGATCCTTATGTAATGCTCCAACCACCATTACAGGCcaaattttagattttgaatCGTTTACTATGAGTTTggaACATCGTAAGCGTTTTAGATATTTGAGTCATTTACCACTAGCGTGTGAATTTTGCATTTGTGAGTTGTTACTAAGACCACCAGTTTTGTCGAAAAGCACAATACATAATTTTATGCCAGAGTTTAATAAAAGAAAGTCAATTCGCTCAAAGAAGTTAGAGGAACAGAGAAAATTTGATCGTAAAGCTTCTAACGCAAGAAATAAagaatttgGCTATCAATGTGTTGATGATTGTCCGACAAGTAATATTGATTTAGCAGATCTTGATAATTTTCCTTGCAGCTTTTCTCCTACAACTGAATCGATCaatcaaaattcattttataatgAAGCAATTGCAGATGAAAACAATGGTTTAGGAAAACCTGGTTTGTCTTTTGCTCAAATGTTGAAAGTAAAACAACCAGATGACGCGATGTTTCAAAAGCCAAACATTCATCTAACAAACAAAAGTGatacaTTAACACGCAACTTATCTGTCTTACAAGATAATGAATGTGAAATTTCAACACCTAcctttaaagaaatgtttaatgCTGCAATTTCAGCGacttctttaaaatgtttagattcaactaaagaaaataattctaaaaagaaaaagcaaaaaggGGTTTTACTATTTTCCACAGGTGCTCAAAGAAAATACTAAGTTTTCGTGTTCCattgaagttctttttttttttaatttttaaaaagttgctatAACTCTTATAATTAAAGCAAtgtcaaactttttaatagtttatatacaaaaaaatcgTATGGTAATATTTTTTACGTATAAACCCacgtataaatttattttttagtttattttcgctttatgtaaaaacaaaattataattttgtgttACGGTAAAAACtcagattaaaaattatttcatctcaaatatatttatacgagtttcaatataa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XI59	E3 ubiquitin-protein ligase RNF10 OS=Rattus norvegicus OX=10116 GN=Rnf10 PE=2 SV=1
Q3UIW5	E3 ubiquitin-protein ligase RNF10 OS=Mus musculus OX=10090 GN=Rnf10 PE=2 SV=2
Q08E13	E3 ubiquitin-protein ligase RNF10 OS=Bos taurus OX=9913 GN=RNF10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005851 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039739 all species →	Family	RING-finger protein MAG2/RNF10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12983 all species →	RING FINGER 10 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26979	RNF10; E3 ubiquitin-protein ligase RNF10	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.