Gene detail

Detailed information of XP_065663328.1 in Hydra vulgaris

Genomic Location: NC_088929.1:11361170...11380756
NR annotation: XP_047142668.1, THO complex subunit 5 homolog [Hydra vulgaris]
Species abbreviation HVULG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC100198946

ATGAAGACAAAAAGTGATGATATTAAACGACGCATGAGTACACGAAGCAGTGAGACTTTGGTGGTCAATGATAAAGATCTTTCGACAGAAAATTCTGAGGGAAATTCTACTAAGATAATTACTACAAAAAAACAATGCACAGATCGACAAATCTTTCAATATGAAGAACAAGAAGCCATTTCACGAGATTCTCATGATGATGTTGATTTGTTTTGCCGAACATGTCGTAATATTGAAGTTGCTATCAGTGATATAAATGATTTGAAAAAAAGCAAAGATGGTTGTGAAGAAATCAAAGAAAAACGTATTGATGCTGTTATTCTAGCTACAAATCTAAAGAAACTAAACAGGCTCACCCAAATGAGAGGAAAGAATGCAGCAGAAAAAACTCAGGCAGCAAAATCAAAAGTTGATAGTCTTCATCTTGAACTTCAAAATCTTTTGTATGAAGTTGTACATATCAAGAAAGAAATTCAGCAATGTGTCAACTTTTCATCAAAAGATGAAGATATTGATTTGGTAGACATAGATACATTTTATAAAGAAGCTCCTATTGAACTTTCTCATCCAGAGGTAACTAAAACAGATGCCCATAAACAAATGTTGGCTAGACTTGATTGGGAGTTGAAACGGCGTAAACAGTTGGTTGAACAGAAAAATAAATTCTTAGAAGAGAAAAAAAAAATTGAAGATGAAATCTATTCCAAGACAAATTATTTAAATAGTTTAAAACCACATCTCGCACAAATTATGAAGACTACTGAGCCTGTACAAGAACTTATGGGTGTGTCATTTGAAACTGAGCGTTTGATGTTTGAATCTGCACAGTATTTATCCAGACCTTTATATTTACTGTACGTTCAAGCTAAAGCTTACAGAGATACATGTGATAAAGTAATGCAAGTTGAAATAGAAGGTGATATAAACGAAGCTAAAAATGATCTTCAAACAGAAACTGTAATTATAGATGAGAGTGATGATTCTGATTCAGAAAATGTTGAACCCTCTGAAACTAATAGCGAAAGTCACAGAAATCGAAAAAAGGAAGGCACACTCAATCGATTAGAAGAAAAGCGAAACAAGTTGTTAACTCCCCATCCTCTTTATGTGCGAATAAAATGGAAAAAAAAAGACACATATGAGTTAGATATGCTGTTTAAATATTTGCCTCAATTGAATGTGAGTTGTATCCAAGTAAATTTAAATATTGAAGGGTCAACGTCTTTTCCTTTATTATCATCTGACGTCATTTTAAGAGATCTTTTGGCCTCAGATTCAGGCAATGAACTACCAAGTGTTGCAAGCAAGTATCAATTAGAATGCTTAGGTTCAGAATCTTTTGATCCTTATATAAAATTGGTTGGTTATCCATATTTGTGGGTCCAGTGGATCTGTGGATTAAATAATTTACCAAACAAAAAACTTCAAAATACAATGACCGATTCAGCTATAAATATGAAGCATTTCCAAACAGTAATCAAACATATACGAAAAAGAATAAAAGGAAGACTGTCGTTACAAAGGCAGTTGCATCTGCTTGAAAGCCTCCAGCTACCTGATTTAAACAGTCCTTGCAAATCGTTCAGTGTATTAACAAGTTGGAAAGAGCTTACACTAGAGGAGTTTATGAGTTACGAAAAGGGAAGGGCGTTGTTTGCGATGGAAATCGTTCCGCGTGACTCTATGTACTACTCTGCTACAGTTACTCGAGAAGAAAACTTAGATGTTTTAGTGGCTATACACCCAAACTATCCTCAAGAACCGCCAGTTTTTCTACTAAGTATACAAACTGCATGTATTGAAAAGCGAAATAGCTTAAGAAATTTAGAACGTGAAATAAATGCTTTTACAGAAGAGTTAGTTCTTAAGTGCTCATCAGATATGCTTCTTTCATCCATGCTCCATAAGTTGGCGGTATGTTTTGATATATTTGTCGAGACAGGGGAGAAGATTTCTAGTAAAGATCGACTTTATATAATAAAATTAAGAGGACGCGATCGTAATCGACCTTATCGTTATCAAAATGAAGGATATTTTATACAACGTTAA

Transcript

rna-XM_065807256.1

cttttcaaaaagtagattaacataacaaatatttaacacaATGAAATGAAGACAAAAAGTGATGATATTAAACGACGCATGAGTACACGAAGCAGTGAGACTTTGGTGGTCAATGATAAAGATCTTTCGACAGAAAATTCTGAGGGAAATTCTACTAAGataattactacaaaaaaacaatgcacAGATCGACAAATCTTTCAATATGAAGAACAAGAAGCCATTTCACGAGATTCTCATGATGATGTTGATTTGTTTTGCCGAACATGTCGTAATATTGAAGTTGCTATCAGTGATataaatgatttgaaaaaaagcaaagaTGGTtgtgaagaaatcaaagaaaaacGTATTGATGCTGTTATTCTAGCTACAAATCTAAAGAAACTAAACAGGCTCACCCAAATGAGAGGAAAGAATGCAGCAGAAAAAACTCAGgcaGCAAAATCAAAAGTTGATAGTCTTCATCTTGAACTTCAAAATCTTTTGTATGAAGTTGTACATATCAAGAAAGAAATTCAGCAATGTGTCAACTTTTCatCAAAAGATGAAGATATTGATTTGGTAGACATAGatacattttataaagaagCTCCTATTGAACTTTCTCATCCAGAGGTAACTAAAACAGATGCCCATAAACAAATGTTGGCTAGACTTGATTGGGAGTTGAAACGGCGTAAACAGTTGGTTGAAcagaaaaataaattcttagaagagaaaaaaaaaattgaagatgaAATCTATTCcaagacaaattatttaaatagtttaaaaccaCATCTCGCACAAATTATGAAGactACTGAGCCTGTACAAGAACTTATGGGTGTGTCATTTGAAACTGAGCGtttgatgtttgaatctgcacAGTATTTATCcagACCTTTATATTTACTGTACGTTCAAGCTAAAGCTTACAGAGATACAtgtgATAAAGTAATGCAAGTTGAAATAGAAGGTGATATAAACGAAGCTAAAAATGATCTTCAAACAGAAACTGTAATTATAGatgaGAGTGATGATTCTGATTCAGAAAATGTTGAACCCTCTGAAACTAATAGCGAAAGTCACAGAaaTCGAAAAAAGGAAGGCACACTCAATCGATTAGAAGAAAAGCGAAACAAGTTGTTAACTCCCCATCCTCTTTATGTGcgaataaaatggaaaaaaaaagacaCATATGAGTTAGATATGCTGTTTAAATATTTGCCTCAATTGAATGTGAGTTGTATccaagtaaatttaaatattgaaggGTCAACGTCTTTTCCTTTATTATCATCTGACGTCATTTTAAGAGATCTTTTGGCCTCAGATTCAGGCAATGAACTACCAAGTGTTGCAAGCAAGTATCAATTAGAATGCTTAGGTTCAGAATCTTTTGATCCTTATATAAAATTGGTTGGTTATCCATATTTGTGGGTCCAGTGGATCTGTGGattaaataatttaccaaacaaaaaacttcaaaatacaATGACCGATTCAGCTATAAATATGAAGCATTTCCAAACAGTAATCAAACATATACGAAAAAGAATAAAAGGAAGACTGTCGTTACAAAGGCAGTTGCATCTGCTTGaAAGCCTCCAGCTACCTGATTTAAACAGTCCTTGCAAATCGTTCAGTGTATTAACAAGTTGGAAAGAGCTTACACTAGAGGAGTTTATgAGTTACGAAAAGGGAAGGGCGTTGTTTGCGATGGAAATCGTTCCGCGTGACTCTATGTACTACTCTGCTACAGTTACTCGAGAAGAAAACTTAGATGTTTTAGTGGCTATACACCCAAACTATCCTCAAGAACCGCCAGTTTTTCTACTAAGTATACAAACTGCATGTATTGAAAAGCGAAATAGCTTAAGAaatttagaaCGTGAAATAAATGCTTTTACAGAAGAGTTAGTTCTTAAGTGCTCATCAGATATGCTTCTTTCATCCATGCTCCATAAGTTGGcggtATGTTTTGATATATTTGTCGAGACAGGGGAGAAGATTTCTAGTAAAGATcgactttatataataaaattaagAGGACGCGATCGTAATCGACCTTATCGTTATCAAAATGAAGGATATTTTATACAACGTTAATAAAGAATGAAacgttaaaaattttgttgtgaattcatttaaaacagtgtcggaataaaaaatgttgtagaACTTTGAATATCTTGAAATTGTAAGTCGGATAGCAAAAAGAAATTTGAGTTCTACGAAACGTTTTAAAAAGTTGGTGAGCCTCTCATCATCGACTAACTCTCATCATCGACTAACAACCGGTTggaattaacaaaattttactttcCGAAATGAGTTTTGAGTCAAAAAGCAAATCTTATGAAgctaaaaaatcaaagttttaaatattaggatactcgaattttttaaataaaatcattttgcaAGTTTTGTCtctattgtataaataaataacagttAAACTCATTCAaagcaataaaaagtaaaacattaaaagtaaattgtttGTAAAACGTTAGTGAAGTTCCATAAAACACAATCTACAAGGTGa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28DG8	THO complex subunit 5 homolog OS=Xenopus tropicalis OX=8364 GN=thoc5 PE=2 SV=1
Q13769	THO complex subunit 5 OS=Homo sapiens OX=9606 GN=THOC5 PE=1 SV=2
Q8BKT7	THO complex subunit 5 homolog OS=Mus musculus OX=10090 GN=Thoc5 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005018 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09766 all species →	FmiP_Thoc5	Fms-interacting protein/Thoc5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019163 all species →	Family	THO complex, subunit 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13375 all species →	FMS INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000445 all species →	Cellular Component	THO complex part of transcription export complex	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0032786 all species →	Biological Process	positive regulation of DNA-templated transcription, elongation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13174	THOC5; THO complex subunit 5	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.