Gene detail

Detailed information of XP_065666780.1 in Hydra vulgaris

Genomic Location: NC_088930.1:29524337...29639041
NR annotation: XP_047136619.1, NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial [Hydra vulgaris]
Species abbreviation HVULG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC100213479

ATGTTACGGCATGGAAGAGCACTTTACAATTGTTGTTCAAGACAATTTTTAAAACAAAGTTCTGTATGTCGGCTACTTCACTATACTGAAAAAAACAATGCCAAAATTGAAGTCTTTGTTGACGATAAGCCCGTTTTGGTAGATCCCGGCACAACTGTTATGCAAGCTTGTGCAATGGTTGGTGTTGAAATCCCACGTTTTTGTTATCATGATAGACTATCTATTGCTGGTAATTGTCGAATGTGCTTGGTTGAAGTTGAAAAGTCAGCAAAACCTGTTGCTGCATGTGCTATGCCAGTGATGAATGGATGGAGAATCAAAACTGATTCAGTGTTAACTAGACAAGCAAGAGAAGGTGTTATGGAATTTATTCTTATTAATCATCCGCTTGACTGTCCAATTTGTGATCAAGGAGGTGAATGTGATTTGCAAGATCAATCGATGGCATTTGGTAATGATCGTAGCAGATTTGTGGATGTCAAGTTTGAAGGAAAAACTGCAATAGAAGATAAAAATATTGGTCCACTTGTAAAAACCATAATGACTAGATGTATTCAATGTACAAGATGTGTTCGTTTTGGTAATGAAATTGCGGGTGTTGAAACACTTGGAACAACTGGGCGTGGAGGAGATATGCAAATTGGCACTTATGTTGAAAAGATGTTCAAATCAGAACTTTCAGGAAATATTATAGACATTTGTCCTGTTGGAGCTTTAACTTCGAAGCCATATGCTTTTACTTCTCGTCCATGGGAAATTCGGAAAACAGAATCAGTTGATGTCATGGATGCAGTTGGAAGTAATATTGTTGTTGGTACACGTGGAGGAGAGGTTATGAGAATATTACCAAGAGTCAATGAGGATGTCAATGAGGAGTGGATTTCAGACAAAACACGCTTTTCATATGATGGTCTCAAGCGCCAACGTTTAAACACACCATACATTCGTGGGGAACATGGTAACTTGATACCTTGTGGGTGGGAAGATGCTTTAATCAAAGTAGCAAGTGTACTTTCCTCAACTCTTGGATCACAAATGGCAGTTATTGCTGGAGATTTGGTTGATGCTGAAACATTAGTTGCTGCTAAGGATTTATTTAATAAGTTTGATTGTGAAAATCTTTTTACTGAAGCTATCGTGCCAAACAGTGGTTGTGGATTTGATTTAAGATCCAATTACTTATTTAATTCGACAATAGCAAAAATTGAAGAAGCAGACGTTCTACTTATTGTGGGAAGTTGTCCTCGTTATGAAGCACCTATTGTAAATGCACGCATAAGAAAAGCTTGGGTTCATAATGAGCTTGATGTTGCTGTTATTGGTAAAAAGACAGATCTTACTTATGACTATAAGCATTTAGGAGATGATTTGTCTGTACTTTATGATCTGGCAGCTGGTAAACATAGTTTTTACAAAGTTTTACAAAGTGCTAAAAAACCAATGATTATTGTAGGGAATGTTAATCATCCAGAACGTAATCTAATGCATTCTCTATGTGTAAAGTTATCAAATGGTTTAAAGTCTAATGTTAATCCTGAATGGAGAGTTCTTAATATTCTTCATAAGGTTGCCAGTCAAGTAGCTGCACTGGATGTTGGATATAAATCTTTTTCAAATAATTTTAATAATATTAAACTTCTGTATTTACTCGGAGCGGATAGTGGAGAAATATGCAGAGAAAAATTACCCAAATCTTGTCTTGTAGTATATCAAGGTCACCATGGTGATAATGGAGCATCATTTGCAGATATAATAATGCCTGGAGCAGCGTATACCGAAAAAACTTCAACTTATGTAAATATGGAGGGTCGTGCCCAGCAAACAAAACGGGCTGTTACACCTCCTGGTTTGGCTCGCGATGATTGGAAAATCATTCGTGCATTATCAGAGATTGCTAACAAGACACTGCCATATGATAGTTTAAATGAATTGCGTCAACGAATGACTGAGGTATCGCCAAACCTAACACGATATGGTGTCATAGAAGCTGCCAATTTTCTTTCTCAGTCTGTGTCTTTGGATCAGACATCACCTTCAAATATTCGAAATGGGTTACTTGTACCAGAGATAACTACTTTATCTGGTTTTTATATGACCAACTCGATATCTAAAGCTTCGCAAACTATGGCAAAGTGTGTGCAAGCAGTTCAACAAATGATGTAG

Transcript

rna-XM_065810708.1

GCCGTATCCAGTAATTTATTTATCGATGGTCAAAATATTCTGGATACGGGCTGTGGTTTAACCCGTCCTAGTCGATACAGTATAATAAACTTAGACCAGCGGCTTCATTTTTCTTATCTGAAACTCAAGGAATtctgataaaaagtttttaaatataatttatagaGCAAATATGTTACGGCATGGAAGAGCACTTTACAATTGTTGTTcaagacaatttttaaaacaaagttctGtatGTCGGCTACTTCACTATACTGAAAAAAACAATGCCAAAATTGAAGTCTTTGTTGACGATAAGCCCGTTTTGGTAGATCCCGGCACAACTGTTATGCAAGCTTGTGCAATGGTTGGTGTTGAAATCCCAcgtttttgttatcatgatagaCTATCTATTGCTGGTAATTGTCGAATGTGCTTGGTTGAAGTTGAAAAGTCAGCAAAAcCTGTTGCTGCATGTGCTATGCCAGTGATGAATGGATGGAGAATCAAAACTGATTCAGTGTTAACTAGACAAGCAAGAGAAGGTGTTATGgaatttattcttattaatcATCCGCTTGACTGTCCAATTTGTGATCAAGGAGGTGAATGTGATTTGCAAGATCAATCGATGGCATTTGGTAATGATCGTAGCAGATTTGTGGATGTCAAGTTTGAAGGAAAAActgcaatagaagataaaaatattggtCCACTTGTAAAAACCATAATGACTAGATGTATTCAATGTACAAGATGTGTTCGttttggtaaTGAAATTGCGGGTGTTGAAACACTTGGAACAACTGGGCGTGGAGGAGATATGCAAATTGGCACTTATGTTGAAAAGATGTTCAAATCAGAACTTTCAGGAAATATTATagacatttGTCCTGTTGGAGCTTTAACTTCGAAGCCATATGCTTTTACTTCTCGTCCATGGGAAATTCgGAAAACAGAATCAGTTGATGTCATGGATGCAGTTGGAAGTAATATTGTTGTTGGTACACGTGGAGGAGAGGTTATGAGAATATTACCAAGAGTCAATGAggATGTCAATGAGGAGTGGATTTCAGACAAAACAcgcttttcATATGATGGTCTCAAGCGCCAACGTTTAAACACACCATACATTCGTGGGGAACATGGTAACTTGATACCTTGTGGGTGGGAAGATGCTTTAATCAAAGTAGCAAGTGTACTTTCCTCAACTCTTGGATCACAAATGGCAGTTATTGCTGGAGATTTGGTTGATGCTGAAACATTAGTTGCTGCTAaggatttatttaataagtttgattgTGAAAATCTTTTTACTGAAGCTATCGTGCCAAACAGTGGTTGTGGatttgattTAAGATccaattacttatttaattcgACAATAGCAAAAATTGAAGAAGCAGACGTTCTACTTATTGTGGGAAGTTGTCCTCGTTATGAAGCACCTATTGTAAATGCACGCATAAGAAAAgcTTGGGTTCATAATGAGCTTGATGTTGCTGTTATTGGTAAAAAGACAGATCTTACTTATGACTATAAGcatTTAGGAGATGATTTGTCTGTACTTTATGATCTGGCAGCTGGTAAACATAGTTTTtacaaagtTTTACAAAGTGCTAAAAAACCAATGATTATTGTAGGGAATGTTAATCATCCAGAACGTAATCTAATGCATTCTCTATGTGTAAAGTTATCAAATGGTTTAAAGTCTAATGTTAATCCTGAATGGAGAGTTCTTAATATTCTTCATAAGGTTGCCAGTCAAGTAGCTGCACTGGATGTTGgatataaatctttttcaaataattttaataatattaaacttcTGTATTTACTCGGAGCGGATAGTGGAGAAATATGCAGAGAAAAATTACCCAAATCTTGTCTTGTAGTATATCAAGgtCACCATGGTGATAATGGAGCATCATTTGCAGATATAATAATGCCTGGAGCAGCGTATACCGAAAAAACTTCAACTTATGTAAATATGGAGGGTCGTGCCCAgcaaacaaaacgGGCTGTTACACCTCCTGGTTTGGCTCGCGATGATTGGAAAATCATTCGTGCATTATCAGAGatTGCTAACAAGACACTGCCATATGATAGTTTAAATGAATTGCGTCAACGAATGACTGAGGTATCGCCAAACCTAACACGATATGGTGTCATAGAAGCTGCCAATTTTCTTTCTCAGTCTGTGTCTTTGGATCAgACATCACCTTCAAATATTCGAAATGGGTTACTTGTACCAGAGATAACTACTTTATCTGGTTTTTATATGACCAACTCGATATCTAAAGCTTCGCAAACTATGGCAAAGTGTGTGCAAGCAGTTCAACAAATGatgtagtttttaattaataaaaaatttatatatgctACAATTTATGCCATGCCACTAATatcaaaacaaactttgttttataataaaaattatcttaaaaataaactatatttgttATGTGAAAAATTATGTAAgaccaaatttaaattttcaaattttttaggagtttaa

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P15690	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus OX=9913 GN=NDUFS1 PE=1 SV=1
Q91VD9	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Mus musculus OX=10090 GN=Ndufs1 PE=1 SV=2
P28331	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens OX=9606 GN=NDUFS1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005775 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13510 all species →	Fer2_4	2Fe-2S iron-sulfur cluster binding domain	Domain	Interproscan
PF00384 all species →	Molybdopterin	Molybdopterin oxidoreductase	Family	Interproscan
PF09326 all species →	NADH_dhqG_C	NADH-ubiquinone oxidoreductase subunit G, C-terminal	Family	Interproscan
PF10588 all species →	NADH-G_4Fe-4S_3	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019574 all species →	Domain	NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding	Interproscan
IPR001041 all species →	Domain	2Fe-2S ferredoxin-type iron-sulfur binding domain	Interproscan
IPR000283 all species →	Conserved_site	NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site	Interproscan
IPR050123 all species →	Family	Prokaryotic molybdopterin-containing oxidoreductase	Interproscan
IPR006963 all species →	Domain	Molybdopterin oxidoreductase, 4Fe-4S domain	Interproscan
IPR036010 all species →	Homologous_superfamily	2Fe-2S ferredoxin-like superfamily	Interproscan
IPR006656 all species →	Domain	Molybdopterin oxidoreductase	Interproscan
IPR015405 all species →	Domain	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like	Interproscan
IPR010228 all species →	Family	NADH:ubiquinone oxidoreductase, subunit G	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43105 all species →	RESPIRATORY NITRATE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0051536 all species →	Molecular Function	iron-sulfur cluster binding	Interproscan
GO:0008137 all species →	Molecular Function	NADH dehydrogenase (ubiquinone) activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0042773 all species →	Biological Process	ATP synthesis coupled electron transport	Interproscan
GO:0003954 all species →	Molecular Function	NADH dehydrogenase activity	Interproscan
GO:0045272 all species →	Cellular Component	obsolete plasma membrane respiratory chain complex I	Interproscan
GO:0045333 all species →	Biological Process	cellular respiration	Interproscan
GO:0016651 all species →	Molecular Function	oxidoreductase activity, acting on NAD(P)H	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03934	NDUFS1; NADH dehydrogenase (ubiquinone) Fe-S protein 1	EC:7.1.1.2	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.