Gene detail

Detailed information of XP_065670418.1 in Hydra vulgaris

Genomic Location: NC_088931.1:72381606...72417043
NR annotation: XP_002163442.1, nucleoporin p58/p45 [Hydra vulgaris]
Species abbreviation HVULG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R332	Nucleoporin p58/p45 OS=Mus musculus OX=10090 GN=Nup58 PE=1 SV=1
Q9BVL2	Nucleoporin p58/p45 OS=Homo sapiens OX=9606 GN=NUP58 PE=1 SV=1
P70581	Nucleoporin p58/p45 OS=Rattus norvegicus OX=10116 GN=Nup58 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005242 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15967 all species →	Nucleoporin_FG2	Nucleoporin FG repeated region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024882 all species →	Family	Nucleoporin p58/p45/NUP49	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13437 all species →	NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006913 all species →	Biological Process	nucleocytoplasmic transport	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14307	NUPL1, NUP49; nucleoporin p58/p45	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.