Gene detail

Detailed information of XP_065673199.1 in Hydra vulgaris

Genomic Location: NC_088933.1:39246558...39256351
NR annotation: XP_047146724.1, cysteine sulfinic acid decarboxylase [Hydra vulgaris]
Species abbreviation HVULG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_065817127.1

AGGTTTTGCGATTTGAACCGCAAGTCAACTTTACatGCAAAGAAAGCGAATCAAGTTGATCAAGAAAGTTTTGataagaGAGAGCCAATCTATTGTCGTCATCGCAACGGGATTTTACAAATAATCGCACGTCTAACGTAATAAGAGAATAAGCTATTTTTGTTTGTGACGTTTTTTTAAACTGAAAGCTTCAAACCAAAGTATCACAAAACCAAGCGAAAATCCGAGAAATAAAAGCGTAGCTCTCGAAGAAAATTGTGGTAGAAGATCTTAAAAGAGAGTATATTTACACACGCAACATGTCTGCAATAAGTTCCATGAAAAAAAACCGGTACGTTGATAAAATCGAGGCAATGCTAACGTTACAAAAACCTAAGATTGCCATTGATCACCGAGAACACGTTGTcgctaaaaaagaaaaacctgTGCGAAAGAAAATCCTTTTAAAAGATTACACTTATAAagattttttcccGTATGCTGCTGACGAAAAAATAACAGAAGAAGTTATAGTAAGAGTGGTGTCAAAGTTGTCTGATTTCATCAAATCCTCTAACGATAGAACTAGCAAAGTTATACACTACATTGATCCATGCCAATTGCAGAAAGAAAttgactttaatttaaaaaacgagGGGGAAAATCTTCAAGAGATCTTGTGTATAACAGATAAAGTGCTAAAGTATGCTGTAAAAAcaggtCATCCTCGGTTTTTCAACCAATTGTTCTCTGGTTTGGACATCACGTGTTTGATGGGACAATGGATCAGTACAACAACCAATACATTAATgtttaCTTACGAAGTAGGACCTGTTTATATAATGATGGAAAAATACCTTCTCGACAAAATGAAGTCAATAATAGGTTATTCAAATGGTGATGCACAGATGTTTCCTGGAGGTTCAATATCAAACATGGAGGCTATGAGCATTGCAAAGTATCATTTTCATCCAAATCTTAAAGAAGAAGGTCTTTATGGAGGAAAGCAATTAGTAGCTTTTGTTTCTGAGGAGGCGCATTACTCATCTGATAAAGCTGCTGCGACATTAGGCATTGGCACCAACAaccttaaaaagataaaatctgACGAAAAagGAAAAATGGTTGTAAAAGACTTAGTTGAACAAATTGAGGCAAGTTTGTTGCGTGGAGAAGAACCATTTTTTGTGTGCGCCACCGCAGGAACAACAGTTTTAGGTGCTTTTGACCCAATTAATGATATTGCAGACATATGCAAAAAGTATCGATTGTGGCTTCATGTTGATGGTGCTTGGGGAGGCGGGTCTTTGTTATCACGTAAATATAAGCATTTAATGGCAGGTGTAGAACGagcGGACTCTGTGACATGGAACCCTCACAAGCTAATGGGATGTTTGTTTCAATGCtcaattctttttacaaaaaaaaaagacatacttGCATCTTGCAATAGAGAAAGCGTTGATGGTGCATCTTATTTATTCCAAAAAGATAAACGACTATACAACGCCAAAGAGTGGGATCAAGGTGATAAAACAATACAATGCGGACGAAACGTTGACGTACTTAAATTATGGCTAATGTGGAAAGCCAAAGGTGACAAAGGTATGGAAGAGCAGATTGACCGAGTTTTCAATCTTTCGAGATACCTTGcagatgttattaaaaaacgaGAAAATTTTAAGCTTATCATGGAGCCTCAGTGCACAAACGTTTGTTTTTACTACTACCCTCctagcattaaaaaaatgaacgaTGGTCCagaaaaaaatgctaagctacATTCAATTGCTCCAATTATAAAATCAAGAATGACACTAGAAGGAACAATGCTTTGTGGTTATCAACCATTAAAAGAACATGTCAATTTTTGGAGAATGACCGTTATCAACCCAGCCGTGACGTATGATGACATGGACTTTGTTGTAAACGAAATAGAACGTTTAGGGAAagatttatgataaaaatttattattttttgtaaatagtttctgtacatttttttttcaaaatatagcaatcttatta

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48319	Glutamate decarboxylase 1 OS=Sus scrofa OX=9823 GN=GAD1 PE=2 SV=1
Q05329	Glutamate decarboxylase 2 OS=Homo sapiens OX=9606 GN=GAD2 PE=1 SV=1
P48321	Glutamate decarboxylase 2 OS=Sus scrofa OX=9823 GN=GAD2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005722 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00282 all species →	Pyridoxal_deC	Pyridoxal-dependent decarboxylase conserved domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021115 all species →	Binding_site	Pyridoxal-phosphate binding site	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR002129 all species →	Family	Pyridoxal phosphate-dependent decarboxylase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45677 all species →	GLUTAMATE DECARBOXYLASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016831 all species →	Molecular Function	carboxy-lyase activity	Interproscan
GO:0016830 all species →	Molecular Function	carbon-carbon lyase activity	Interproscan
GO:0019752 all species →	Biological Process	carboxylic acid metabolic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18966	GADL1, CSAD; sulfinoalanine decarboxylase / aspartate 1-decarboxylase	EC:4.1.1.29 EC:4.1.1.11	Pantothenate and CoA biosynthesis	ko00770	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.