Gene detail

Detailed information of XP_065675097.1 in Hydra vulgaris

Genomic Location: NC_088934.1:53043371...53076908
NR annotation: XP_047134920.1, uncharacterized protein LOC105843433 [Hydra vulgaris]
Species abbreviation HVULG · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC105843433

ATGCGACCTTATAAGGAACTGAAATTGCAGTTATTTGTACACATTCCAAATGATCAAGTTATTTCTTTAAACATAAATTCCAACTCAACGATCGGTGATTTAAAATCTGCACTTGAACTACGAGCTGGCATTTTATCTGATTTACAAGACTTATATGTAAACAATATAAAAGTTATGGAAAAAGATACATTTTCTTCTGTAAAAGTGAAAAACGGCTCTTTACTTCAATTAAAATTTAAGGAAAAAATGTTTAGAAATGTATACATTGATGCTTTTAATGGCGACTCTAAAAAAGTTTTTAAACATGAAATTGAAGCTATTCACGGCGAAGAGTTAAACGTGTTGGATGAGGTAAGCATTGTTTTAAACAAAATGGCATCATTAAAAGCTTTTCAAGCAGGTTTTATAGCTTGTTTTAAAGGACATGTTGCTTTACTGAGAAAAATTATTATCAAAAACTCTGCTGTTATTGAGAGCACTACAAAAAATGGGCGATCTCTTCTTCACGTTGCAGCAGACGCAGGAAATTATTCGTGTTTAGCGGTCCTTTTAAAAAAAGGTTCCCAACTATGTAAAAAAGATAATGATGGTTTTACTGCATTGCATCTTGCAACTGCAAACGGACACAGTCAATGCGAAAAGTATCTTGCAACTCATGATCTGAAGTTCTTCTGTGGAGGTGGCTCGAATTTAAATAAAGAAAAATCGGAGAAATTTTTCCCTCCAATAATAGTTCATACGACCAACGTCAACGAAGTGCACGAGAAAAAAAAATTAAATCAAGAACAGCTTCCTACTTTAGAAACACTACCTTCTCAGGAACAGCTTTCTGCTCAACAACAGTTTCTAACTCTTGAACAGCTTCCTACTTTAGAACAGCTATCAACTCGTGAAAAATTTCTTGCTCATGAAAAAAATCTTAGTTCAATCGACAAACCAATAAATATTCAGAATCAAGTTGATATTAAGGATATACAATGTTCAAGAAAAAAGGTTTGTCAATTATTTCGTTCAAGATCAGCTCCTCAAATTCAAACAATTCAACAGTCTAATCTTGCGAGTACAAGCTACACAAATCAAAGTGATTTAAAAGATGTATCAAACAACAAGAAAAATGAAGAATGCAAAAAAATAAGCAAGCAGCTTTTTAATACTGGAATAAGTGAGAAGTTTTTGAGCTCTACCCCACTAAGCAACTTCAATATGAATAAAGCAATGTTTACTCAACAAAGCATACGTTTGTTACCAGATAAAGATAGCACAAAATTGACTATACCCTGGTCACATGCTGTTGAAAAGAGAATTACAATTTCAAAGAGCTTCAGTCACTTTCAAGAATACCCAAAACCTGTTTGTAAAAAATTTAAAGTTCAAAATGCTTCTATTGAAAGCAAACCATCAAAAAATAAAAAGCTCTGTTTAAAACAAACAAAAGTACCAAACATACAAACTGTATTAAGTCTTGAGAGAAATTTTAGTATTCTAAACCGAATTACTGACGGAAAAGTATTTTTTCTAGATTCTTCTTTTTTAACTTTTGTGAACGAAAAAAATATTTTCCTAAACAATTTAGAGAAACTTAAAGGTAACATTGAAAATGCGGAAACTTGCCATAATAATTCAGTCGATAGTAGTGCGAGTAATAAGGTATCATTAACCGTAACAAATAAAAAAGAAGTCTTCAAAGTTCAGCCTCATAAATACCAGTTTGAAGCAAAAAGTCATGTTTACCATAAAACTTCGCTTACTGTATATAAATTGAAAAGAAAAGAGGTCAAACGAATAACCTTTGAAGAGTGGGTGTTTTTAAAAAAGCAATTGCAAAATAAAAATAAAACTTTTGAAACACCATCAGTTGCAAATTCATCAAAATCAAAAAACCAAAAATCGCATGCTGTCTCATTTGAAACATGGTTACAAAAAAAAAGAGCACACGAAGAATTAAAAAAACAAAAACAAGCTGAATTAGATTTGAAAAAAGAAAATGAATCTTTGCTCATGAGCAATTCTCGTCATATGGATCCACACCAACGTACTTTTGAAGAGTGGTTTTTTGAAAAAAAAAGCCAGCAGAAGCACCAAGAAAAAAAGGTTTTTAAACGAAAAGTATCATCAGCTGAAGATAGAGAACTTATTTTTAATTTGTGGCTATTGGACAAGTTTAAAGCAGAGATTCAAACTGAAACAGAACTTTTGATGAAGGAACGCTTTCTTTCAAGCTCTATGGATTATTAA

Transcript

rna-XM_065819025.1

ttcttttattttttttaagttattaaatatactttataaacttgattaaaattattttcaaacaaaacagAAACGCGTTGCGATCGCGTTGGGTCAATGTTGTggcataaatttttaaacttggaCATAGCTAATACAAAAGAAACAATTAATTGatttaagaacaattttttttttaaaatgcgacCTTATAAGGAACTGAAATTGCAGTTATTTGTACACATTCCAAATGATCAagttatttctttaaacataaattcCAACTCAACGATCGGTGATTTAAAATCTGCACTTGAACTACGAGCTGGCATTTTATCTGATTTACAAGACTTATatgtaaacaatataaaagttATGGAAAAAGATACATTTTCTTCTGTAAAAGTGAAAAACGGCTctttacttcaattaaaatttaaggaaaaaatgtttagaaatgTATACATTGATGCTTTTAATGGCgactctaaaaaagtttttaaacatgaaaTTGAAGCTATTCACGGCGAAGAGTTAAACGTGTTGGATGAGGTAagcattgttttaaacaaaatggcATCATTAAAAGCTTTTCAAGCAGGTTTTATAGCTTGTTTTAAAGGACATGTTGCTTTACtgagaaaaattattatcaaaaactcTGCTGTTATTGAGAGCACTACAAAAAATGGGCGATCTCTTCTTCACGTTGCAGCAGACGCAGGAAATTATTCGTGTTTAGCGgtccttttaaaaaaaggttccCAACTATGTAAAAAAGATAATGATGGTTTTACTGCATTGCATCTTGCAACTGCAAACGGACACAGTCAATGCGAAAAGTATCTTGCAACTCATGATCTGAAGTTCTTCTGTGGAGGTGGCTcgaatttaaataaAGAAAAATCGGAGAAATTTTTCCCTCCAATAATAGTTCATACGACCAACGTCAACGAAGTGcacgagaaaaaaaaattaaatCAAGAACAGCTTCCTACTTTAGAAACACTACCTTCTCAGGAACAGCTTTCTGCTCAACAACAGTTTCTAACTCTTGAACAGCTTCCTACTTTAGAACAGCTATCAACTCGTGAAAAATTTCTTGCTCATGAAAAAAATCTTAGTTCAATCGACAAACCAATAAATATTCAGAATCAAGTTGATATTAAGGATATACAATGTTCAAGAAAAAAGGTTTGTCAATTATTTCGTTCAAGATCAGCTCCTCAAATTCAAACAATTCAACAGTCTAATCTTGCGAGTACAAGCTACACAAATcaaagtgatttaaaagatgtatcaaacaacaagaaaaatgaagaatgcaaaaaaataagcaaGCAGCTTTTTAATACTGGAATAAGTGAGAAGTTTTTGAGCTCTACCCCACTAAGCAACTTCAATATgaATAAAGCAATGTTTACTCAACAAAGCATACGTTTGTTACCAGATAAAGATAGCACAAAATTGACTATACCCTGGTCACATGCTGTTGAAAAGAGAATTACAATTTCAAAGAGCTTCAGTCACTTTCAAGAATACCCAAAAcctgtttgtaaaaaatttaaagttcaaAATGCTTCTATTGAAAGCAaaccatcaaaaaataaaaagctctgtttaaaacaaacaaaagtacCAAACATACAAACTGTATTAAGTCTTGAGAGAAATTTTAGTATTCTAAACCGAATTACTGacggaaaagtattttttctagattcttcttttttaacttttgtgaacgaaaaaaatattttcctaaacaatttagagaaacTTAAAGGTAACATTGAAAATGCGGAAACTTGCCATAATAATTCAGTCGATAGTAGTGCGAGTAATAAGGTATCATTAAccgtaacaaataaaaaagaagtcttCAAAGTTCAGCCTCATAAATACCAGTTTGAAGCAAAAAGTCATGTTTACCATAAAACTTCGCTTACTGTatataaattgaaaagaaaagagGTCAAACGAATAACCTTTGAAGAGTgggtgtttttaaaaaagcaattgcaaaataaaaataaaacttttgaaacacCATCAGTTGCAaattcatcaaaatcaaaaaaccaaaaatcgCATGCTGTCTCATTTGAAACatggttacaaaaaaaaagagcacacgaagaattaaaaaaacaaaaacaagctgaattagatttgaaaaaagaaaatgaatctTTGCTCATGAGCAATTCTCGTCATATGGATCCACACCAACGTACTTTTGAAGagtggttttttgaaaaaaaaagccagCAGAAGCAccaagaaaaaaaggtttttaaacgAAAAGTATCATCAGCTGAAGATagagaacttatttttaatttgtggcTATTGGACAAGTTTAAAGCAGAGATTCAAACTGAAACAGAACTTTTGATGAAGGAACGCTTTCTTTCAAGCTCTAtggattattaaaaaacttttttttatttgtaaatattttatctacttttactttatttttttacacattttaatttaataactgtatttatttatatcattagaCTGCTTGTATATATTGcttatattagtaaaataaaatatcattaaaa

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005891 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR039323 all species →	Family	Ankyrin repeat domain-containing protein 60	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22677 all species →	ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_065675097.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.