Gene detail

Detailed information of XP_066019073.1 in Pocillopora verrucosa

Genomic Location: chr3:19464628...19477771
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131794164

ATGTCTTCGAGTTTTGGAGATTTGCTGCAGCAGGCAGAGCAATTGACTGCCGATATGGACAGTGGCTGGGAATTGCCAAGGGTCGAGAGAAACCTCCATCAACTCGCAGAGGCTGGTCAGAGGTTATGGTCTCAAACGACTGGTGTTTCTGGAGCTGATGTTCAAGTGAAGGCTTCCATTTTACTTGGCACCAAAGGCTTTGATGTCCCACGCCTTTCAGAAAAACTAGATCGTCTTGACACCACAAAGACATTTGAACCTCTTGAGCCTGTTAGAGAGACTGATATTCAGGGTTTCCTTCGGAATGAGAGAGAAAATGCAATTTTGGCTGCCATAGAGGAAGCAAGAGAAAATACATTTAATCAGGCTGAAAGACATCAGTGGTCCTGTATGGAGAGTGAATGGGAAAAAGAAAAGGAGAAAATTCTCAACTCGCTACTGGGAGCTGGGCAGGAGACACTAGATTTCTCAGGAGAAGCAGAGGTGTTCACAACAAGTTCTTTGAGTTTACAAGGTAGAAGTGCCCTTGATGCTACAGAACAAGCTTATGCCAGACAGGTTTATATCCATAATGAAGCCCTCATTCAGTCAGCAAGACACAACATAGTGGATGGATTTACAGCGCTTATTGACAGATTTGAAGATCCGATCATCAAGGGGATGTGGATGTTTATCAAAGAACTTGGAGAAGAACTTCATAGGTCTCATGGTTCCTTGCATATTCTGGCAGAGACAGTTAGGTTTTCCTTAGATTTTCAAGTGGCATTTATTAAAATGGCCAGAAGTTTCTTGGAAAGAAGATACTTGCAGTTTGTTCAAGACAGTGTATATAGCAATTTGCCTCGAGCAAAGTTAGGAGGAGTTCCAGGCACTCTGCAACTGGTCAAGAGTTTTTTGAAAATTAAACTTCCTTCAGTTGTACAAGGACTTGAGGATGGTGATGTTGATGGTGCTCCACTGTGGCCATTAATTTATTACTGTCTGCGATGTGGAGACCCTAAAGCAGCTTTACAAGCAGTGCAACATGTGCCACAGCATTTGGCAGAATTTCGAGACTTTTTTGTGGAATATTTGAACAGCGAAGAGAGCAGGCTCAGTCCCAGCTCGGAAAGCAAACTACGGCTTCAGTATAAAAGATCTATTCGTACAAGTCAGGATCCCTTTAAAAGGGCCGTCTACTGTCTGATTGGTCAGTGTGATGTACAAACAGATTCTCATCAAGAAGTTGCCAACAAAACTGAAGACTACCTGTGGCTTAAGCTCTGTCAAGTGACTGTTAAAGAGGAAGAAGGGAATAACAATAGTGTTACCTTTCAAAGGCTGCAGACCATGTTATTGGAACAGTTTGGTGAGGCACACTTTAATGCATATCAAAAGCCTTTGTTGTACTTTCAAGTTTTGTTTTTGACCGGACAGTTTGAAGCGGCCATAGAATTCTTGTCACGGGCGGAAGCCTTTAGAAGTCATGCTGTGCACTTCGCCATTGCACTCTTTAAGATGCATGTTATTTTGTTGCCTGAGTCAATCCAAGCACAACTTTTGACTTCCAGTCCTAGAGATCCTCAACCCAACAGAAGATTGAACTTTGCACGTCTGATCATGTCATACACACGGAAATTTGAGGTTACTGATCCAAGAGAAGCTCTTCAATATTTCTTTTTGTTGAGAGGAATGAACGGACCGCAGGGAGAAGACCTCTTCATGTCCTGTGTAAGTGAACTGGTCTTGGAAACTAGAGAGTTTGAAATGCTACTTGGAAAGCTAGAACCAGATGGAAAGAGGAAGCCTGGTTGTATTGACAAGTTTCACAGAGATACTACAAAAATCATTGAAGTTGTGGCAAAGGATTCTGCCGAAAAGGGTTTGTCTGAGGAGGCTGTCAAACTCTTTGATTTAGCCAAGAATCATGATGGAGCCCTGGAGATCCTGAACAAACTTCTTAGTCAGGTGATCTCAGCATCCAGTGGTGTTCAATCTCAACGGGATAGACTACATACATTGGCTTTTGACTTAGCACAGAGATACAGAACATCAGGTCATTCAGCAAGCCAAAGTAGAATAGGCACATTTTTCCTCTTGTTGGATCTTATGCAGTTCTTTGATCTCTACCATGCTGGCCAACATGACACTGCTTTAGATGTCATGCAGAAGCTAAGACTAGTTCCATTGGGGATTGAAGCAGTAGAGGAAAGAGTGACAGCTTTCAGGCAGTACAATGATGAAATACGACGAAACTTACCAGATGTGCTTCTAGCAACCATGAACATTCTGTACACAAAGTATCGTAACGCTAGAGGGAGTGGTCAGAGTCCTCTGACTGGTAGTCAGAGAAATCTGAGAGATGATGGTGGACAAGAGAGGTTTCGCGATATTTTGAGGCGCCAAGCGCGAGCCCTGATCACCTTTGCGGGATTAATTCCGTACCGTCTTCCTGGAGACACGAACGCACGGCTGGTGCAGATGGAAGTCCTTATGAACTGA

Transcript

rna-XM_066162976.1

GTGCAAAGCACATGGAAAGGAAACATGGCGGGCTTTACGAAAATTACAAACTAAGCCATCATTTGCGCGAATTTTTCGGGAAGCCCAGAAGATATAGTTATTTTAGAGCTTAAATCTAGTATTCTGGCgcgttttgttttcaatcatgTCTTCGAGTTTTGGAGATTTGCTGCAGCAGGCAGAGCAATTGACTGCCGATATGGACAGTGGCTGGGAATTGCCAAGGGTCGAGAGAAACCTCCATCAACTCGCAGAGGCTGGTCAGAGGTTATGGTCTCAAACGACTGGTGTTTCTGGAGCTGATGTTCAAGTGAAGGCTTCCATTTTACTTGGCACCAAAGGCTTTGATGTCCCACGCCTTTCAGAAAAACTAGATCGTCTTGACACCACAAAGACATTTGAACCTCTTGAGCCTGTTAGAGAGACTGATATTCAGGGTTTCCTTCGGAATGAGAGAGAAAATGCAATTTTGGCTGCCATAGAGGAAGCAAGAGAAAATACATTTAATCAGGCTGAAAGACATCAGTGGTCCTGTATGGAGAGTGaatgggaaaaagaaaaggagaaaattctCAACTCGCTACTGGGAGCTGGGCAGGAGACACTAGATTTCTCAGGAGAAGCagagGTGTTCACAACAAGTTCTTTGAGTTTACAAGGTAGAAGTGCCCTTGATGCTACAGAACAAGCTTATGCCAGACAGGTTTATATCCATAATGAAGCCCTCATTCAGTCAGCAAGACACAACATAGTGGATGGATTTACAGCGCTTATTGACAGATTTGAAGATCCGATCATCAAGGGGATGTGGATGTTTATCAAAGAACTTGGAGAAGAACTTCATAGGTCTCATGGTTCCTTGCATATTCTGGCAGAGACAGttagGTTTTCCTTAGATTTTCAAGTGGCATTTATTAAAATGGCCAGAAGTTTCTTGGAAAGAAGATACTTGCAGTTTGTTCAAGACAGTGTATATAGCAATTTGCCTCGAGCAAAGTTAGGAGGAGTTCCAGGCACTCTGCAACTGGTCAAgagttttttgaaaattaaacttcCTTCAGTTGTACAAGGACTTGAGGATGGTGATGTTGATGGTGCTCCACTGTGGCCATTAATTTATTACTGTCTGCGATGTGGAGACCCTAAAGCAGCTTTACAAGCAGTGCAACATGTGCCACAGCATTTGGCAGAATTTCGAGACTTTTTTGTGGAATATTTGAACAGCGAAGAGAGCAGGCTCAGTCCCAGCTCGGAAAGCAAACTACGGCTTCAGTATAAAAGATCTATTCGTACAAGTCAGGATCCCtttaaaagGGCCGTCTACTGTCTGATTGGTCAGTGTGATGTACAAACAGATTCTCATCAAGAAGTTGCCAACAAAACTGAAGACTACCTGTGGCTTAAGCTCTGTCAAGTGACTGTTAAAGAGGAAGAAGGGAATAACAATAGTGTTACCTTTCAAAGGCTGCAGACCATGTTATTGGAACAGTTTGGTGAGGCACACTTTAATGCATATCAAAAGCCTTTGTTGtactttcaagttttgtttttgacCGGACAGTTTGAAGCGGCCATAGAATTCTTGTCACGGGCGGAAGCCTTTAGAAGTCATGCTGTGCACTTCGCCATTGCACTCTTTAAGATGCATGTTATTTTGTTGCCTGAGTCAATCCAAGCACAACTTTTGACTTCCAGTCCTAGAGATCCTCAACCCAACAGAAGATTGAACTTTGCACGTCTGATCATGTCATACACACGGAAATTTGAGGTTACTGATCCAAGAGAAGCtcttcaatatttctttttgttgagAGGAATGAACGGACCGCAGGGAGAAGACCTCTTCATGTCCTGTGTAAGTGAACTGGTCTTGGAAACTAGAGAGTTTGAAATGCTACTTGGAAAGCTAGAACCAGATGGAAAGAGGAAGCCTGGTTGTATTGACAAGTTTCACAGAGATACTACAAAAATCATTGAAGTTGTGGCAAAGGATTCTGCCGAAAAGGGTTTGTCTGAGGAGGCTGTCAAACTCTTTGATTTAGCCAAGAATCATGATGGAGCCCTGGAGATCCTGAACAAACTTCTTAGTCAGGTGATCTCAGCATCCAGTGGTGTTCAATCTCAACGGGATAGACTACATACATTGGCTTTTGACTTAGCACAGAGATACAGAACATCAGGTCATTCAGCAAGCCAAAGTAGAATAGGCACATTTTTCCTCTTGTTGGATCTTATGCAGTTCTTTGATCTCTACCATGCTGGCCAACATGACACTGCTTTAGATGTCATGCAGAAGCTAAGACTAGTTCCATTGGGGATTGAAGCAGTAGAGGAAAGAGTGACAGCTTTCAGGCAGTACAATGATGAAATACGACGAAACTTACCAGATGTGCTTCTAGCAACCATGAACATTCTGTACACAAAGTATCGTAACGCTAGaGGGAGTGGTCAGAGTCCTCTGACTGGTAGTCAGAGAAATCTGAGAGATGATGGTGGACAAGAGAGGTTTCGCGATATTTTGAGGCGCCAAGCGCGAGCCCTGATCACCTTTGCGGGATTAATTCCGTACCGTCTTCCTGGAGACACGAACGCACGGCTGGTGCAGATGGAAGTCCTTATGAACTGATACTTTATTCCAATGGTTTCCGATGTGCTGCTGAAGAGGCAAGGTGACTAAAGTAAAGACTAGATTTCTCTTTGAGTTTTAATTGTAATCTTCTCAACACTGTTCAGCTTAATGTTcttgattaattaaaaaaaagtgttcctGGTTATCTCTTGATTAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04097 all species →	Nic96	Nup93/Nic96	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007231 all species →	Family	Nucleoporin interacting component Nup93/Nic96	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11225 all species →	NUCLEAR PORE COMPLEX PROTEIN NUP93 NUCLEOPORIN NUP93 DEAD EYE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005643 all species →	Cellular Component	nuclear pore	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0016973 all species →	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0017056 all species →	Molecular Function	structural constituent of nuclear pore	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14309	NUP93, NIC96; nuclear pore complex protein Nup93	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.