Detailed information of XP_066022136.1 in Pocillopora verrucosa

Genomic Location: chr4:24478225...24546353
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09333
all species →		ATG2-VPS13_CATG2/VPS13, C terminal domainDomainInterproscan
PF21679
all species →		VPS13_CIntermembrane lipid transfer protein VPS13, C-terminalDomainInterproscan
PF06650
all species →		VPS13_VABVacuolar-sorting associated protein 13, adaptor binding domainDomainInterproscan
PF16909
all species →		VPS13_DH-likeVacuolar-sorting-associated 13 protein, DH-like domainFamilyInterproscan
PF16910
all species →		VPS13_mid_rptVPS13, central RBG modulesRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015412
all species →		DomainAtg2/VPS13, C-terminalInterproscan
IPR049424
all species →		DomainIntermembrane lipid transfer protein VPS13, C-terminalInterproscan
IPR009543
all species →		DomainVacuolar protein sorting-associated protein 13, VPS13 adaptor binding domainInterproscan
IPR002999
all species →		DomainTudor domainInterproscan
IPR026847
all species →		FamilyVacuolar protein sorting-associated protein 13Interproscan
IPR031645
all species →		DomainVacuolar protein sorting-associated protein 13, DH-like domainInterproscan
IPR031642
all species →		DomainVPS13, middle RBG modulesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16166
all species →		VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006623
all species →		Biological Processprotein targeting to vacuoleInterproscan
GO:0019898
all species →		Cellular Componentextrinsic component of membraneInterproscan
GO:0045053
all species →		Biological Processprotein retention in Golgi apparatusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K19525VPS13A_C; vacuolar protein sorting-associated protein 13A/C-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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