Gene detail

Detailed information of XP_066027402.1 in Pocillopora verrucosa

Genomic Location: chr1:33118256...33128078
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

LOC131772541

ATGAATCCACTGATTGCAAAGATTGTCCACCTCATTCAAGTACTTCTTCCTCATGTGAAGTATTGGTGGAAGCTTCCGGTCGTGCTCGCTATGGTTTACCAATTGAATCAACGAGATTTTATGTTTAGAAACAATTTATTCGATAGCTACTCTCTGGAAAAAATGGGACCGAAGTATGACTGTCAGGACCCCTTGATAGGTCATATATCCCTGGGCTGTGTCACCAAAGAGCCTTTTCCATATTTGCACCAAAAGGATGGACTCAACATTGAAGAGTGTGTGAACCACTGTAAAGATAACAGATACGCTTATGCAGGCTTTGATCACTATCGAAAGTGTTTTTGTGGTGATAAAATCTTGAAATATGTGGAATGTAAGAAGGGCAAGTCTGGATGTGGTAAATCTTCTCAGATTGAAATCTTCAGAACAATGTTCTGTACAGAGGAAATGAAATCAGTAAGGACCCATGACGGAACCTGTAATGACCTGAATCATCCGGCTTCGGGAAGCAGGTATTACCGGTTTGGTAGAAACATAAATCGCACGAAGACGTTTGAGGACAAAAACCTATTTGAACCATCCCCAAGAGAGTTGAGCAAAAGGTTGATGGCCAGAGACAAATTTATTCCCGCCACGACGTTGAACCTGTTGACCGTAGGCTTTTTACAGATGATGCTCCACGACTGGTTTGACCACGGACCGGTAGATACATCATGCAGAATAAAGATCAAACTCCACAAAGACGATCCCGATTATCATAAATTCAAAGGAGAAATGGAAATTCCACGAACTAAAGAGGACAACTGCAAGCAATTCTCGAATAAAGATGGTCCTGCAACCTTTCAGAATGATGTAACGCACTGGTGGGACGGATCGCAGTTGTATGGCAGCGATGAACAGACAAGTGCAAAACTACGCAGCTTCAAAGATGGAAAAATGAATGTTTCAGATGAGGATGGCCTCCTGCCAATCGATAAGAAAACTGGCATTGATATTACTGGTTTTAATCAGAATTGGTGGATCGGTCTCTCTCTTCTGCACAACATATTTACCCGGGAGCACAATTCTATCTGTGACATGTTGAAATCGCATTATCCTCATTGGGACGACCAGAAATTGTACAACACTGCCAGGTTGATCAACGCTGCCGGGCTTCAGAAAATTCACACGGTGGAATGGACACCAGCTGTCTTAAACAGCTCTGCTCTCCGCAACGGAGTATATTTGAATTTTGACATGCCACTCGAAAAGGAAATTTATGATTGGATGGCTGATCACAACATCAGTGTATCAGCGAGCGCTGATATACTGAAGCCTCTCGTGGGACAGCCAAGTGAGTACCATGGGGTTCCTTTCTCCTTGACAGAGGAATTTTCAGCAGTGTATCGAATGCACCCATTTCTGCCTGATGATCTATATCTTCGAAATGCCTCAAGTGGTAAGAGGACAGGAAAATCATACTCACTCCCAGAATTTTCTTTTGCTGGGGCCAGGAACATCACAAAAGAGAACAGCATGGACGACATTGTGTTTACATTCGGTGTGGAGCATCCAGGCGCACTTCGTCTTCATAACTACCCTACACACCTCAGGAACCTAACGTTACCCAATCATCAGCAAGATGGAGAGACAATCGACCTCGCAACAATTGACATATTGCGTGACCGCGAGAGAGGAATCCCACGGTACAATGAATTCAGAAGACTGATAAATCTCCCTCCCGCTGCCACATTTGAAAAGCTTACAAGAAATAAAAAGCACCAGGTGCTACTCAAGGAGCTGTACGACGGCGATATCGAGAAAGTAGACCTGTTGATAGGTTGTCTTGCAGAGGACCCTTTACCAGTTGGGTGGGGTTTTGGTGATACACCTTTCAGAATATTTGTTACTATGGCCACTCGGAGAGTGGAGGCAGACAGGTTTATGACGGACAATTTCAACAACGAGACTTACTCGCCCGAAGGCTTGAAGTGGATTAAAGACACAAACATGAGGAAAGTACTTGTACGCGCATTTCCTGAGATGGAATGGCTGAATGCAACCATGGCTAAAACCAAGAACGCCTTTTGGCCTTGGCCTGCGGTACCTGTCGATTCGTTAAAAAAGCGAGAAGTTTGA

Transcript

rna-XM_066171305.1

TTTATCAGTCGAATCATTCAGGTACTCAACGCCTGGGAAAAGATGAATCCACTGATTGCAAAGATTGTCCACCTCATTCAAGTACTTCTTCCTCATGTGAAGTATTGGTGGAAGCTTCCGGTCGTGCTCGCTATGGTTTACCAATTGAATCAACGAGATTTTATGTTTAGAAACAATTTATTCGATAGCTACTCTCTGGAAAAAATGGGACCGAAGTATGACTGTCAGGACCCCTTGATAGGTCATATATCCCTGGGCTGTGTCACCAAAGAGCCTTTTCCATATTTGCACCAAAAGGATGGACTCAACATTGAAGAGTGTGTGAACCACTGTAAAGATAACAGATACGCTTATGCAGGCTTTGATCACTATCGAAAGTGTTTTTGTGGTGATAAAATCTTGAAATATGTGGAATGTAAGAAGGGCAAGTCTGGATGTGGTAAATCTTCTCAGATTGAAATCTTCAGAACAATGTTCTGTACAGAGGAAATGAAATCAGTAAGGACCCATGACGGAACCTGTAATGACCTGAATCATCCGGCTTCGGGAAGCAGGTATTACCGGTTTGGTAGAAACATAAATCGCACGAAGACGTTTGAGGACAAAAACCTATTTGAACCATCCCCAAGAGAGTTGAGCAAAAGGTTGATGGCCAGAGACAAATTTATTCCCGCCACGACGTTGAACCTGTTGACCGTAGGCTTTTTACAGATGATGCTCCACGACTGGTTTGACCACGGACCGGTAGATACATCATGCAGAATAAAGATCAAACTCCACAAAGACGATCCCGATTATCATAAATTCAAAGGAGAAATGGAAATTCCACGAACTAAAGAGGACAACTGCAAGCAATTCTCGaataAAGATGGTCCTGCAACCTTTCAGAATGATGTAACGCACTGGTGGGACGGATCGCAGTTGTATGGCAGCGATGAACAGACAAGTGCAAAACTACGCAGCttcaaagatggaaaaatgaaTGTTTCAGATGAGGATGGCCTCCTGCCAATCGATAAGAAAACTGGCATTGATATTACTGGTTTTAATCAGAATTGGTGGATCGGTCTCTCTCTTCTGCACAACATATTTACCCGGGAGCACAATTCTATCTGTGACATGTTGAAATCGCATTATCCTCATTGGGACGACCAGAAATTGTACAACACTGCCAGGTTGATCAACGCTGCCGGGCTTCAGAAAATTCACACGGTGGAATGGACACCAGCTGTCTTAAACAGCTCTGCTCTCCGCAACGGAGTATATTTGAATTTTGACATGCCACTcgaaaaggaaatttatgatTGGATGGCTGATCACAACATCAGTGTATCAGCGAGCGCTGATATACTGAAGCCTCTCGTGGGACAGCCAAGTGAGTACCATGGGGTTCCTTTCTCCTTGACAGAGGAATTTTCAGCAGTGTATCGAATGCACCCATTTCTGCCTGATGATCTATATCTTCGAAATGCCTCAAGTGGTAAGAGGACAGGAAAATCATACTCACTCccagaattttcttttgctGGGGCCAGGAACATCACAAAAGAGAACAGCATGGACGACATTGTGTTTACATTCGGTGTGGAGCATCCAGGCGCACTTCGTCTTCATAACTACCCTACACACCTCAGGAACCTAACGTTACCCAATCATCAGCAAGATGGAGAGACAATCGACCTCGCAACAATTGACATATTGCGTGACCGCGAGAGAGGAATCCCACGGTACAATGAATTCAGAAGACTGATAAATCTCCCTCCCGCTGCCACATTTGAAAAGcttacaagaaataaaaagcacCAGGTGCTACTCAAGGAGCTGTACGACGGCGATATCGAGAAAGTAGACCTGTTGATAGGTTGTCTTGCAGAGGACCCTTTACCAGTTGGGTGGGGTTTTGGTGATACACCTTTCAGAATATTTGTTACTATGGCCACTCGGAGAGTGGAGGCAGACAGGTTTATGACGGACAATTTCAACAACGAGACTTACTCGCCCGAAGGCTTGAAGTGGATTAAAGACACAAACATGAGGAAAGTACTTGTACGCGCATTTCCTGAGATGGAATGGCTGAATGCAACCATGGCTAAAACCAAGAACGCCTTTTGGCCTTGGCCTGCGGTACCTGTCGATTCGTTAAAAAAGCGAGAAGTTTGAATGCAACTCAACAAAACAGCTCGGGCTATGTAGAGGGTAGATGAAAAGTTTCTTGTGAGATTTAaggaacaaataaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan
PF01822 all species →	WSC	WSC domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR034815 all species →	Family	Alpha-dioxygenase	Interproscan
IPR050783 all species →	Family	Oxylipin biosynthesis and metabolism	Interproscan
IPR002889 all species →	Domain	Carbohydrate-binding WSC	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11903 all species →	PROSTAGLANDIN G/H SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004666 all species →	Molecular Function	prostaglandin-endoperoxide synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0019371 all species →	Biological Process	cyclooxygenase pathway	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_066027402.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.