Gene detail

Detailed information of XP_066029340.1 in Pocillopora verrucosa

Genomic Location: chr10:18303950...18313428
NR annotation: no NCBI-NR hit recorded
Species Pocillopora verrucosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_066173243.1

ACACGGAGATGCCCAAATCACGGAGATACTACTGTCACCTGTGAACCAGGGAACGAGGTTATTCTTTAAACGAATTCACTTTGTATGATAAAGCAAAATGATGGTTTCGCGATGGTTTTTCACACGGCGGTCATATTTGCTGCCTTGACAGGATTTATCGAAGTATTTTGCAGGGGCTCTTCAACATCAGCTGTATTTATCAGGGAACAAAGCCAGCTGTGAAATGTATTCTGGAGCAGGCCTACCAGCTGCTAGGACACCACCATCAAGTCCACGTGCATCAAAATTTATGTACCATCCTCCACCACTCCCATGCCCTCCAAAAGAGCCTTCCCTAGCCCCTTTATCATCCTTTTCAAATGAATGCAAAACTGATTTTCCTTCAGTATTTCCCCCCCCTTCAACTCAAACAAATGACTTGAATCCAAACTTTTCTCCACTTACATATACTGTACCAGGTGTTAGTGTATCTCCTTCAGATTATTCTTGTACCCCCTTTTCACCTTTTCCTTTATCACCTCCCCCTCCTCCAGCACCACCAGGGAAATCATTCTGTCCTGGAGGATTTCCCTCTCCACCTCCGCCTCCTCCCCcacctcctccccctccccctaaaCCTCCCCTAGCACTTCAAGGAGTATCTACCTCTGCTTTTCCCCCTCCCATTACCCCTGCCGCtgttcctcctcctcctccccctcctcctgGAATTAATCCTTCACTGCCAGGTACTTCTGGAGCAAGGAAAGGTTCAACCATAAGAAAGAAACCTGTCACACCAGTATCCCCCATGAAACCTCTTTTTTGGAAGAGAATACAACTCAATCAGCTACCTGTCAGACTGGAGACTGAGGCCAGTGAAACAGTTTGGGCAACACTCGAGGAACCAACAATTAATGTCAGTCGCCTTGCTGAAACATTTGCCAAGGTGGAGAGAAAGACAGAGGGAAAACTTTTATCCTCTAGATCGATgcacaaaataaaacagcaagttATCCACTTATTGGACAACAAGAGATCGCAATCTGTGGGAATCTTTTTGAGCAGTCTTCATGTTAATATGGATGAGATAAGAGATGCTCTGTACAATGTGAACACCTCCATTGTGGATCAGGAAAGCCTCAGCTCACTGTATGAAATTAGGCCAACAAAAGAGGAACTTCAAACAATAGCTACATTCTGTCAAAAGAATTGTGATGTGATACTTGACAGACCTGAGCAGTTCTTAATGGATTTGTCAAAAATCAGCTGTTATGAGGAGCGACTTTACTGTTTGATGTTAAGAACAAGCGTGACAGATTCTCTCTCAGAAATTGGACAGAAACTGACCAACTTTCGATTGGTTTGTGAGATGTTGCAGACATGCAAAGAAGTTCCGAACATTTTGGGTTTAGTACTTGCCTTTGGGAACTATATGAATGGAGGAAACATTGCTCGTGGACAGGCAGATGGTTTTGAATTGGACATCCTTCCAAAACTGAAAGATGTGAAATGCAAAGACAATTCCACCAACCTGCTACATTATCTTGTAACTGTGTACATTGAAAAGTTTGATAAGAATGCAGGGACTGTTAATTCCAAGTTTCCACTACCAGAACCACATGATCTGAAAGTGGCATCTCAAATAAAGTTTGAGGACATAGAGGCAGAAATAAACAGCTTAAGGAAGCAGTTAGACCTATGTAATAAAAAGCTTTCCAAAGTGATGAAGGAAAGTGAAGAAAGTCTTCAACAACCGTTCAGTAGCATAATGAGTTCATTTCTGGAGCAGAGTCAAGGAGAGGTTTCAGAGCTGGAACAAGCACTTACAGAGTGCCAGAAAAGTTTGTTAGGTTGATTTTAAAGGTTTCGTACAGGTACTCATCCCTTTGGAGATTCTTCAATGCCAAACCTATGGCTACATGTAGTCCACCTCAAGAATTCCTTGAGATCTGGGCAAAGTTTAGTTCTGACTTCCTGTTATTCTGGAGAAAGGAGCAGCAGCTGATTGCCAAACTTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR001265 all species →	Family	Formin homology family, Cappuccino subfamily	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45920 all species →	FORMIN HOMOLOGY 2 DOMAIN CONTAINING, ISOFORM I	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0030866 all species →	Biological Process	cortical actin cytoskeleton organization	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0045010 all species →	Biological Process	actin nucleation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_066029340.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.