Gene detail

Detailed information of ahya_s0099.g31.t1 in Acropora hyacinthus

Genomic Location: sc0000099_pilon:615443...636557
NR annotation: XP_029206387.2, rRNA N6-adenosine-methyltransferase ZCCHC4-like [Acropora millepora]
Species abbreviation AHYAC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ahya_s0099.g31.t1

GTCTTCTTGCATGAAGATGTTACTGCTTTAGAAGATGCCTTGTCAAGGGTGGTCCACGTGGCTTCACTGTTTTCACGTTTCAGGCCCTAATTTGCAATGTCTCCGGTACAAGAAGCTGAGATAAAAGGATGGCACGGAGTGGAAGTGTTTTTGAAGAACGATAGTTTGGTGGACGTCCCTAAATGTCCACATGGGCCAATGCTCTTGTTTGAAAGGTTTTACCACGATGGTCATCCTCGACGGAGGTTCTTTGCTTGTTCAGCAGCGAGAGACAAAAAGGAGTGTGGATTTTTCCAGTGGGAGGGAGAAGAAATTTCAGAGGCAAGAAAAGATGCACACAGACAAATTTTACTGACTTTTGGAAAACCATACAGTCAAGCATGTGATACTTACAAGAAACTGTTTGGTTGTTTGGATGGCAAGCCAAGAGAACATTGTTTGTTTTGCCATTCATGTAACATTTTATTTACACCTGAACAAGAAGAAAAACACCAGTCTCATGAGTGTGAGTATTTTGAAGATTTGTCCAGGTCTACAAGGATTTTGAGACCAAGAGAAAATGAAAAGACACAAGCACAATACTTTTTCTCAAAGAATGCCACAGAATTCTTTTTACATCTTGTGAAAGATTGTGGTTTCAAGAATGTGCTTTGTGTGGGAACTCCAAGGCTTCATGAAGAGATTCAGCACCAGAAGTCACAAGGTGGCAGTTTAGATAGTCTCCTTCTTGATATTGACCACAGATATGGTCAGTTTTTTTCGTCCTCTGCTTTCTGTTGGTACAATATGTTCAACCATTTCTTTTTTGGAGTTGGTGCAAATGAGAAAGCATTTGAGTCATTTGTTGCAAGGGAAAAGTTATTCATAGTGATGGACCCACCATTTGGTGGTTTAGCTGAAGTGCTCGCTGGTACAGTCAAGACCATCTGGAATATCTGGAGGAAAGTAAATTCCTTTGAGATTGACAAAGAGCTGCCAATAATGTGGCTTTTTCCATACTTCATGGAGTCTCTCATCAAGGCAGTCCTTCCATCTTTGACTATGCTTGACTATAAGGTTGACTATGACAATCATCCTCACTTTAAAAGTAAAAAGCAGAAAGGATCCAAACGAGGATCGCCGGTCAGAATCTTTACCAATATCAATCCTGCTGATGTCAAACTCCCCGCTTGGGAGGGTTACAGGTTTTGTGAGAAGTGTGAGAGATATATTTCATCTGAAAATGTCCACTGCGTCAAATGCAATGGCTGTATGTCAAAGGATGGAAGACAGTACGTTCATTGTGAGTTGTGTCGCAAATGTGTCAAACCAGGCCTTAAGCACTGTGAAACATGTGGTCGGTGTGACGCAGAAGGACATAGCTGTGAGAGATCGGTTGACGCAGGTACTTGTTACATGTGTGGAGAACTGGGACACAAGAGAAGGAACTGTCCAACGCGCTTCTCAGAGCCACCAAGAAAGAGGACAAAGGAGAAAAAGCCAAATAAATCTTCAAAAACTGTTGCCAGTAAGAAAAAACACACGAAGGAACTTTCAAGGAAAGCAAAGAAGAAAAAGATTAAATAAAAAAGCCCAATCGCATGGTGGTTTTGATGTGAGAGCAAACTTGACAGTTCTGATATACGTGAACCGAAGAACGTTCCCAGAGATTTGAAGAAAACATTGTTTAAAGAGCAATTATCCTGTGAAACTAGGTGAAACGTCAGCAGGATGAACGCCTCCTCCGTCCCCAACAACCAATCAAATCCAGTGGCTACTGATCCAGACATTGGAGACATCTTGGCAGCCCTTTTGGTCGCCTTGCTTATAATTTGCACATTAATCACTAATTGTTTAGTTTGCGTAACATTTTACCTATTTAAGGACCTAAGGACAGTTTGTCATTATTTTGTCATCAGTTTGAGCGCGGCCGACATTCTTGTTGCTGTAGTAGCTATGCCGTTTTGGTGTGCACTACAACTAACTTCCATGCGGTGGTTGTTTGGTGAGTCACTGAGGACATTTTGGAACTGCATGGACATACTCTGTGGAACAGCTTCAATCATGAATCTCACAGCAGTGTCAATTGATCGCCATGCTGCCATAACTGAACCTTTCAACTACCAGTCTGTGATGACTTCTTTTCGCGCTATTTCCATGATAATCTTTGTGTGGTTTTATTCCATAGTGGTTTCGGGATTACGCTTAGCACCCTGGCCCACCAAAACAAGTTATATGCATTTTGTTTCTGCAACCAGCTTTTTTATTCCCCTCTTCATTATGATAATCATGTACACAAGAATTTATTTGGTTGCTAGGAAACAAGCTCACCGAATGCGTAATGGCCGTAACTACGCAAGTGATGTCAAAGCCGCTAAAACGATCGCTATATTAATCGGCTTGTTCGTATTTTGCTGGGGTCCATTTTTCGCGATTGTCCTATCTATTGCGCATGATGAGACGGTTGTAGTTCCTCACTCGCTGTTCAATGTCATCAAATGGATGGTGTACTGCAGTTCTTGTCTGAACCCCATAATCTACTCTTGTCTTAATCGCAACTACAGACGCGCATTGCGTAAACTTTGCCAACGTGTCCTCAAAAAGCGAGAAACGGTCACTGAGACTTCGTCGAACACTGGTGTTCGGCCGAAAGCCAGAGGCTCGTCTTTTACCGTTAGCACTGTTGATTATGACAATAATGTTGGCGAGCGCAATGGAGGCTGCAGACGTAACTCCCTTGTTTTGGACAGTGTTACAATTAGCGATTCACAAAGAGTTGTTGAAACAAAGTGGTAACGACAGGCTCGCTCGCTTGTTTCAGTAAGCTGTGTGACAATAGGCACAACAGAGTCTTGTTATTTATTATTTGTCAAGCCAAGTTAATAATCAATATTCAGCCTGATATGCTATCATTGTGATTTGCAGGAAGCATAGTTGGAAGAAACTAGTGCTTCTCAATGGTACAGATTTGTCACATACAGCCTTCCCTGTGATGTAAAGGGTTTTGTTAATACGAGGAAACTTATTTCGGGACCGCAAAAGTCTCGAATGGAACATTTATTGCTCATAATATATTCAGCTGAGGTCCGAGAAAGGGCCATAGTAATATATATAGATGGCTTCAGAAATCAAAATTGTCGAAAAGTGTCGGTTACACTGAAAGCTAGTATAGCAAATAAACATAACAAAGGTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E1BGQ2	rRNA N(6)-adenosine-methyltransferase ZCCHC4 OS=Bos taurus OX=9913 GN=ZCCHC4 PE=3 SV=1
Q9H5U6	rRNA N(6)-adenosine-methyltransferase ZCCHC4 OS=Homo sapiens OX=9606 GN=ZCCHC4 PE=1 SV=3
Q8BKW4	rRNA N(6)-adenosine-methyltransferase ZCCHC4 OS=Mus musculus OX=10090 GN=Zcchc4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005386 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06839 all species →	zf-GRF	GRF zinc finger	Domain	Interproscan
PF10237 all species →	N6-adenineMlase	Probable N6-adenine methyltransferase	Family	Interproscan
PF00098 all species →	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010666 all species →	Domain	Zinc finger, GRF-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR039846 all species →	Family	Zinc finger CCHC domain-containing protein 4	Interproscan
IPR041370 all species →	Family	Methyltransferase EEF1AKMT1/ZCCHC4	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR017921 all species →	Domain	Zinc finger, CTCHY-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13493 all species →	ZINC FINGER CCHC DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008988 all species →	Molecular Function	rRNA (adenine-N6-)-methyltransferase activity	Interproscan
GO:0031167 all species →	Biological Process	rRNA methylation	Interproscan
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25177	ZCCHC4; rRNA N6-adenosine-methyltransferase ZCCHC4	EC:2.1.1.-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.