Gene detail

Detailed information of ahya_s0259.g13.t1 in Acropora hyacinthus

Genomic Location: sc0000259_pilon:141530...149545
NR annotation: XP_015764904.1, PREDICTED: protein cereblon-like isoform X2 [Acropora digitifera]
Species abbreviation AHYAC · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ahya_s0259.g13.t1

TTCCCACAAATCATTGCTGGTGTCAACAAATCCAAAACAAAGATGGCGGATGATTCATCCTCTGATGAGGATATTGACGTACAAAATGGATACGATGGAGAACCGGATATTTTCCTCCCTGGCGGTTCAGGATCGGATACTACTGATTCTCCAGCCGAAATTGTTCAAGATAGTGATGGTGAGGAATCTGACGCCATAAATTTTGACCCTTCACTTCCAGCACAACACCAGTATCTTGGAGAGGAGATGGATGAATTTAGTGGTCGTACGTATCATGAACCAGGTTCACATGTGACCCTTCCGCTCTTGATGAGGCCTGACTTAGTTCTAGTCCCTGGACAAACCCTGCCTCTTCATTTGTTTCGTCCACAGATTGTATCAATGATAAAGAACATCATTGAAAAAGACAGGACATTTGGTTTAGTAAATTCGAGAAGTACTGGTAACCATAACCAGTTGTTGGCAGCCATTGGTACAACTGTAGAGATATTCTCCATGAAGGAGGAAAATGAAGCTGGTATTTGCACTTTGAGAATCAAAGCTACAGGAAGGCAACGGTTTAGAATCAAAGAGTTGAGAAGACAAGTTGATGGAGTCTTGATGGCCACAGTCCATGTGTTGCCTGAAGTGACCCTTCCCTCCCACCCTGAGGGGTCTCTGTTGTCCTGTTATCACAAGTTTGGTTGCCAAGCAACTACACATGGCCAACTTGATAAAATCTCTACAGGCAAAAACCGGCTGGGAAAAACTAAATGCAAGAGGGTGGTGATTAGTCTCAGCTCCTGGCCAAGATGGGTTTATCAGCAATACAATCCGTATGTTCTGATGGAGTTTATCAAGAAAGAATTAAAGAGCTGGAGTGATACTCTGTGCCTTGATAATGTTCCCAAAACACCAACAGAATTTTCATTCTGGGTAGCCGCCAATATGCCTCTTGATGACGATCTCCGACTTCAAGTACTCGGCATCGATTGTCCTACCCAGAGATTAAGGAGAGAACTTGAGATTGTTAGAAAGTGTGGTGCCTTTTGTTGTTCGGAGTGTGACACTAAGATCGCAGAAAAAGGCGATTTATTCAGTATGTCCCTTGACGGTCCTCTTGGTGCATATGTGAATCCTAATGGTTGTGTTCATGAGACGCTGACTTTTTACCGCGCTAAGAGCTTCAGATTAAGGGGGAGGCATACAACAGAGAACAGCTGGTTTCCTGGATACGCTTGGACCATCGCCGAGTGTGCGCAATGTGGTAATCATCTGGGATGGCGTTTCACAGCTGTCAAGAGAGGTTTATCGCCGAGTAAGTTTTGGGGTCTGACCCGCAAGGCTCTTAAACCCACCCTGACTTACGAGGAGGGTAATGATCACAGTAAAGCGTGCTCCCCACCCACTCCATCCTGAGAGATTCTTTCCTTGGGAATACAGTAGCAAGTAGCAACTGCCTACTCCAACACCCTGTGGATCGACAAATCGATCCAGAACATGACATCCTTGCGGTACGGCAAGCTGGAGAGTTGTACAGTTCGCTTGCACTTGAGTCCAGAAACAGAACCTGTAGTAGTAAGGCTGGCTCATGAGTGCGTTGGGAACTTGGTGTGCGAGACGTCTCTAGACTCCACTAAGGAATTGAGGAATGATGCGGCTATCGAGATATAAACCTGTTCTGGAGGCACAAAGGAACGAGAGGCCATCAAACTGATTGCTTACGAAACATCGTGGCATGGCCGTGAACCAACAGTGCTTAAGGCATTAGCAACGACATATTGCAACTTGAAGCTGTAATGTTCATACATTAAGGTCTAGTAGCAAAAAGAAATGACTGGAAATGCGAATCAGTCGCAAAGAAATCAGAATTAAAATTCTGGCTTGTGACAGTACGGAGTTGACGTGCATCTTAAAAACACCGTGAGGATGGGACAACTTTTACTCTGATAGGCGTATAACTTATGTCACAGATTGTTTAAATAGGAAAAGACTAGCACATTTAAACAAAAAAAGAAGANNNNN

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68EH9	Protein cereblon OS=Danio rerio OX=7955 GN=crbn PE=1 SV=1
Q5R6Y2	Protein cereblon OS=Pongo abelii OX=9601 GN=CRBN PE=2 SV=1
Q96SW2	Protein cereblon OS=Homo sapiens OX=9606 GN=CRBN PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006105 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03226 all species →	Yippee-Mis18	Yippee zinc-binding/DNA-binding /Mis18, centromere assembly	Domain	Interproscan
PF02190 all species →	LON_substr_bdg	ATP-dependent protease La (LON) substrate-binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004910 all species →	Domain	Yippee/Mis18/Cereblon	Interproscan
IPR034750 all species →	Domain	CULT domain	Interproscan
IPR003111 all species →	Domain	Lon protease, N-terminal domain	Interproscan
IPR046336 all species →	Homologous_superfamily	Lon protease, N-terminal domain superfamily	Interproscan
IPR015947 all species →	Homologous_superfamily	PUA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14255 all species →	CEREBLON	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031464 all species →	Cellular Component	Cul4A-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11793	CRBN; cereblon	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.