Detailed information of c0027.g044.t1 in Palythoa umbrosa

Genomic Location: c0027:651680...660263
NR annotation: CAH3154138.1, unnamed protein product [Pocillopora meandrina]
Species Palythoa umbrosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6DEY8TBC1 domain family member 31 OS=Xenopus tropicalis OX=8364 GN=tbc1d31 PE=2 SV=1
Q6DDI6TBC1 domain family member 31 OS=Xenopus laevis OX=8355 GN=tbc1d31 PE=2 SV=1
Q96DN5TBC1 domain family member 31 OS=Homo sapiens OX=9606 GN=TBC1D31 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004127 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00566
all species →		RabGAP-TBCRab-GTPase-TBC domainFamilyInterproscan
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000195
all species →		DomainRab-GAP-TBC domainInterproscan
IPR035969
all species →		Homologous_superfamilyRab-GAP-TBC domain superfamilyInterproscan
IPR051570
all species →		FamilyTBC1 domain family involved in cilium biogenesisInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR001680
all species →		RepeatWD40 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19853
all species →		WD REPEAT CONTAINING PROTEIN 3 WDR3Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005813
all species →		Cellular ComponentcentrosomeInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for c0027.g044.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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