Assembled genome (size, level, N50, BUSCO)
Predicted gene models with CDS / transcript / protein sequences
InterPro, Pfam, PANTHER, GO and KEGG assignments
OrthoFinder orthogroups and TF / ubiquitin families
RNA-seq samples with expression values (TPM)
Positive / negative co-expression edges
scRNA-seq datasets, cell atlas and marker genes
| Assembly name | Pumb_1.0 |
|---|---|
| Assembly level | Contig |
| Assembled by | GCA_042854165.1 |
| Genome size | 304.89 |
| Scaffolds | 2838 |
| Contigs | 2838 |
| Scaffold N50 | 237614 |
| Contig N50 | 237614 |
| GC content | 37 |
| BUSCO | C:91.5%[S:89.9%,D:1.6%],F:4.9%,M:3.6% |
| Protein-coding genes | 24,800 |
| Proteins | 24,800 |
| Chromosomes | - |
| WGS accession | BAACCE01 |
| BioProject | PRJDB18008 |
| Submitter | Marine Genomics Unit, Okinawa Institute of Science and Technology |
| Year | 2024 |
| Reference | Azooxanthellate Palythoa (Cnidaria: Anthozoa) Genomes Reveal Toxin-related Gene Clusters and Loss of Neuronal Genes in Hexacorals Genome Biology and Evolution [link] |
Availability shown here is recomputed from the live database every hour (last built 2026-09-16 19:22). If a data type is listed as unavailable for Palythoa umbrosa, it has not been generated for this species in the current release — the coverage matrix shows the equivalent row alongside every other species, and the statistics page gives the site-wide totals.
