Gene detail

Detailed information of c0029.g034.t1 in Palythoa umbrosa

Genomic Location: c0029:586526...588085
NR annotation: CAH3119096.1, unnamed protein product [Porites lobata]
Species Palythoa umbrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VCN9	Tubulin-specific chaperone C OS=Mus musculus OX=10090 GN=Tbcc PE=1 SV=1
Q3SZE9	Tubulin-specific chaperone C OS=Bos taurus OX=9913 GN=TBCC PE=2 SV=1
Q5R5J7	Tubulin-specific chaperone C OS=Pongo abelii OX=9601 GN=TBCC PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008035 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07986 all species →	TBCC	Tubulin binding cofactor C	Domain	Interproscan
PF16752 all species →	TBCC_N	Tubulin-specific chaperone C N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016098 all species →	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR038397 all species →	Homologous_superfamily	TBCC, N-terminal domain superfamily	Interproscan
IPR027684 all species →	Family	Tubulin-specific chaperone C	Interproscan
IPR017901 all species →	Domain	C-CAP/cofactor C-like domain	Interproscan
IPR012945 all species →	Domain	Tubulin binding cofactor C-like domain	Interproscan
IPR031925 all species →	Domain	Tubulin-specific chaperone C, N-terminal	Interproscan
IPR006599 all species →	Domain	CARP motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15139 all species →	TUBULIN FOLDING COFACTOR C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0007021 all species →	Biological Process	tubulin complex assembly	Interproscan
GO:0007023 all species →	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21766	TBCC; tubulin-specific chaperone C	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.