Gene detail

Detailed information of c0047.g036.t1 in Palythoa umbrosa

Genomic Location: c0047:443125...446944
NR annotation: KAJ7390687.1, Eukaryotic translation initiation factor 3 subunit F [Desmophyllum pertusum]
Species abbreviation PUMBR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00303	Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens OX=9606 GN=EIF3F PE=1 SV=1
Q4R5B8	Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis OX=9541 GN=EIF3F PE=2 SV=1
A5A6I3	Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes OX=9598 GN=EIF3F PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005948 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01398 all species →	JAB	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	Family	Interproscan
PF13012 all species →	MitMem_reg	Maintenance of mitochondrial structure and function	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000555 all species →	Domain	JAB1/MPN/MOV34 metalloenzyme domain	Interproscan
IPR027531 all species →	Family	Eukaryotic translation initiation factor 3 subunit F	Interproscan
IPR037518 all species →	Domain	MPN domain	Interproscan
IPR024969 all species →	Domain	EIF3F/CSN6-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10540 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005852 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0031369 all species →	Molecular Function	translation initiation factor binding	Interproscan
GO:0071541 all species →	Cellular Component	eukaryotic translation initiation factor 3 complex, eIF3m	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03249	EIF3F; translation initiation factor 3 subunit F	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.