Gene detail

Detailed information of c0134.g005.t2 in Palythoa umbrosa

Genomic Location: c0134:44351...62853
NR annotation: CAH3172040.1, unnamed protein product [Porites lobata]
Species Palythoa umbrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

c0134.g005.t2

ATGCCCAAAGAGGATAGAAAGGAATACTTTAGAACACTTGGGCTTGATAATTGTTCCTCGGAAAATGAAATTAAGCGAGCTTACAAGAAGCTTTCACTTCAATTCCATCCCGATAAGAGTTTCGGCGATTGTTCTACAAGCAAGTTTGAAGACATTGGACGAGCCTTCAGGATTTTAACATCAGATTTGGACAATGATTCTGTAAAGACTGATTTTGACAAGATGTTTTTCGACTTCTTTCGTGACATTTTATTCGGAAAGAAAGAAGGTGTTAGTATGGATTTTCTTCCATTCTTTTGTGGGGCAAAGTCTCATGGCGGCAGTTGCTCTAGGTCAGAGGGTGACTACGAATACAGGTGTCAGGATGGGGAAGAAGACTTTGAAATTGATGGAGAAAAGGAGCTTGATAGTTTTATTGACATTGTTAAGACAAGAAAGAAGAATGGAAAGTCTGTGCCACCAGAATTCTCAGAAGATAAGGTTAATGGGCTAAAAGATCAACTTGTGCAACACAAAGAAGATATGAAAAAAGATGGCTCCAAAAAGCAGCAAGCAAGTAAAAAAGGCAAAAGTTCTGTTCCAGTTGCTAAGCCCAAACCTAAAAGTAAGAAAGAATTACTAGCAGAACAAAGAAGGCGTCAAAAGGAAATGCAACAAATAGCTGTAGAACTCgaagagaagagaaaaggagatgaagaaaaagaaaaacaaagaaaaCAGATGGAGGCAGAAAAGCAAAAGCGTCTTGAAGAAGAaagaataaaggcacagaatgaagacaGAAAACGAAGAGAAAGAGAACAAAAGGAGCGTGAAAAACAACAAAAGCTCGATCTTGAGAAggaggaaagaaggctacggcaattggaagaagaaaggaaaaagaaagaagaggaagaaaaAAGaaagaaagctgaaaaagaaaaggctgaaaaagaGAGAGCAGCCAAAAAGgcgGCTGCCCAACAGCTGGCGAGAGGTCAAATTCAGCAGAGTCAATCAGTTCAACAACAGAAGCCCACCACCAAACTACAACCAGCAGTTGCTAAGAAGAAAGATCCTAACCGCTTTGCATCCAAAGAATTTGCTGGCCTTGTGGATGAAGTTCATGATGGGGGTTGGTCAGAGGGACCATCCACCAAAGGATCTGGATGGGGAAATTCTCTAGAAAATTGGGACAATGAGGAAAAATGGGGTGCTGTGGACAGGTCATGGGGTGGAAAAGAAGGTGTTTGGGATAAGGTTGTTTATGATGAAACTGATAATGAATCTTGGCCCACAGTTGGCATTAAAGGAACAGTAGGAGACTCAGGAAAGATGAATACAACAAATTCTTCTGAAAAGAGCAAAGTTACTAATGTAGATGGATCTTTTCCACCTGCTGGTACCACCAAACTGAGCTCAGACTCTTCTAAAACCAATTCAGATAATTCAAATGAACAGAAATTACCAAGCTCAGGATCAGGTTGGCAAGGTACAGCGTATCCAAATTCATCAGAAAACTGGGATATTGCAGACGAATCTCTAGATCAAGCACTTGATGCAGCTGAAACTATTAGAGGCTTAGGATCAGGGTGGGGTGGGGCACATTCAGGGGGTCTAGGAGGTATTATAGGCACTAATTACAGTACAGCAAACCAGCAGAAAGATCCATCACTTCCGAAAAATCCTTCTGTCACTGACTCTTCAAACACATGGGATAGTGAATCGTCAAATAATTCAGAATTGCAAGGATGGAGTAAAACTCCAGGAAAAGGACCAAAAACAAAACCGAATGGAACAACATCTGTGTCATCAGCTACTTCTAGTCTTTCATCATCCTGGGGAGGAACGCCTGCTGAAAGTTCTTCGGGATGGTCAAACTCTTCTGTGAATTCTAAACGATCAAACCCAGATCAGTCTAAATGGGGCACTGTATCTTCTTCTAACAGCACAAGCACGCAATCTCTTACTACTGTGTCAAAAAGTTTAGATCAGAAGTCAGGTGAATCATCTACAAAGACTGAATTATCTTCAGGGTGGGGGGATTTACCTGGAGCGTCAAACTGGGGGACTGGGTCTAATGACGTCACAGGTACATCATGTTGGGAAAGTGCAGGTATCTCCAGTGCCGTAAAAAATGAAAAGAATGAATGGAAATCTGGTAATGAAAGGGTAACTGGTTGGCTTGAGTCAGGAGGAAACTCACCTGATGTTGCTAGTTCAGAATGGGGACAAACAAGGGACCAGGATGAAGGCAGTGAAGGATCATGGGATGGTTGGACTACAGCATCTAAACGCAATAAGGTTCCGAAACCACCAGGAGCTCAAGATGGCAATGTTTGgtttagtagatctctaaaaaaactTTTAGACATGGGTTTTAAGCAAGAAGACGCAGAAAAGGCTTTAAAAAGCAATCACCTGAACATAGAAAGCGCTATAGGAGATCTTTTGTCACTAAATATCGGAGGTGGTGAGGATACAACCCCAGTAGTTCCAACAATGACAAAGGAGCCAGATCCTGCAGAAGCTGCACAGATCGCTcaacagcagccaaaactaaaccgcaaacagcgacggaagctgcagcaacagcaacaagcagaacaggctaaagaactgcaaACGTCACTGCCCGAACTAAAGGAGTCTCAAACAGCAATTTCTCAACCAGAGAACAATACATCCACTCTCTTACCTGTAACTAAAGCTTCAGAAAGTAGTAACAAGACGGAGGACGTTAGCGCTGCCTTGGAACAGGCAAAAGAACCTAACATTCAAAAAAAGAAAATTGAGAAAGACACAAACGGCAAGCAAAGCACTGGAAAACAAACTGATTCTAAACAATTTCCCGAAATTTCAAAATCTTCTGATTCACCTAATCTCGCTTCTAAGCCTTCAACAGTGCAGGGATCGCCAAATATGAACAATAAAAGAGTGAATACTAATATGATGTCACATGGTTCAGGCGTTCAACTCCCAGTTAGACAGCCTCTGGCACACCCATTGATTCagcaacagctcatgcaacaacAACTACACATGCAGCAGCTACGTATGGCACAAGGGGGGCTGTTGCAACCCCcacatctcacaccgcaacaaattgCACATCTTACACCGcaacaaattgtcctattacaaCAAATTGCTCAATTACAAATAGTGCAACAGAGACTTGCAGCGCAATCAGTTGCCCAGCAACATCTTGGACAGAAGCATGGGCAGTCAGGTCTTCATACAcagcaacagttgtttcagcaacagcagcaaattgcagtcatgattgcgcagatgcagcaacaagtactgcagcagcaacagGCTTCCATGGCTGGCCGATTTCCGAATGGCTCTCCACCAACTTTACAGCAACAGGCACAGCAAGTTACGTCTCAGCATGCTGGAGCAACTCAGGCGCAAAAGTCAGTCCcaacttcaaagcaacaacaacaactaccacagcagcagcaaGGTGAAAAGACGAATGCAGATGaactgaagAATAAAACTGAAGACAAATCAAAAACCCAAGCCAGCGCATCACAAGAATCAGTACCTCAAGTTCAAGCCTCAGTTAGTTCAGACCATTCAAAGCAACCATCTCCAGCCCCACAGTCGCGATTGCAGCAGTATAAACAACCCTTACTGGCCGAACCAACAAATGAACTGTCTGTTACTTCTGCTGCAACTACAAAGTCAAACCCACTGTCAGTTAACACTCAGACCCCTGCCGTGACAGAGCAATGGAGCAGTTCTGCTAAATTAGACTCTAATGTGCCGAATCCatcaacaacaccaCCATCTAAAGAGGTTCAGAACAGTGGGTTGTCTCCGCGCACTCGCAGTAGAATCGCTGACCCTGTGTCCAGCAGATGGGGTGTGGATGCTGGTCCTAAACTCTCAGCAGACCCACCAGAGTTCAAACCAGGCGTGCCATGGCGTCCTAGAGATAACACCCCTAAACAGACTAGAGAATCCTCATCAACGGCTCCAGCAGGAGGCACTGTATCAtcggcgtcagcatcAGCATCTACTACGTCCAACCTAACGCAGGCAGGTTCTGCTACAGACACTTGGGCTAAACCAGCTCAAAGCTCAGTTACACCCTCAGTGCCAACAGCCAGCACATCTGTAGACAAAGTTGCTGTTACTAGTAACTCATCAACACCCTTTACTGAGATTCCAATGCCAAGTAATTCTTCTCTCGCTGGTCAAAGTCAGGCCGTGCTTGGTGTGAGTTCTCCATGGCAGATTCCAGGCGACAAGAGTGCATTCTCAGCACCTACAACCAATGCCAACAAAACTCAGTCAAATCCAGGTGCCGGAATACGACCTCCACCAGGTTTAGGCTCTGACTCATCTGGAACTGAGGAAGATCAACCTACCTGGCTGAAAAATTTGATGGGTGCTGCCAATGACTCTGGAAAGTCTGATTTTCAGTTCAGTCAGTTCGGATTTGTTGGAAATACACCTTGGAGCCACAACCAGGAGGGAGCTCAACTGTTTGGGTCATTCAACCCAGCGCCACCATCGTGGGCAGCACCCGGAGGGCCTACACCTAGTGTTTcatcctcagcagcatcatcaGCAAACTCAACGGCAACCAATGGCATAAACATGAACAGCACATTCAGTGGGGCCTCAGACATATCTAAGAGGCCAAACCTTGGCATAAGTTCCTGGTCATCGACTCAACCCATCCCTAGTGCCCAGGAGCTGAGCAAAgcagcagctgcATCATCCACAAATACCCCAACTACGATGGCTAGTGGTTCTCCATTGAAGGGTGCGAATCCGATGTCCACATGGCTAGTCCTCCAGAACTTGACCCCAAAGGTTGACCCAAGTGAGTTGCGCACGAGATGTCAGCAGCATGGTTCCCTTCTGACTTTTCAGTTAAATCTACGTCATGGCAACAGTCTCATTCGCTATGGTAGTAAAGAAATTGCTGCAAAAGCACGAGAGAGTCTTAACTGTGCTGTCATTGGTGGCGGAACTATTACAGCCGACTTTGCAACAGACGCTGACATAGGTAGCTTTTTTGAACAAACTATGGACTGGAGCAGTAATCCCGTTCCTGGCAGCAACCAGTGGTCCTTTCAAGGCAAGCCACAGAATGCAGCTACAACTGACGGTTCGGCTGCTGTTCTAGAATCATCTAGTGCCTCTGTTAATGCCCCGGGTAATGGCAATAAATCTACTCCTGGAATGCCTTGGGGTGTTGGAGGTGTAGCCTCAGTGCCTTCGCAGTTCTGGGGTTCCACCCAGGGCCCCGGAGCCGTGGGTAGTAGGTTTATAGCTCCTCAGGGTACTGCAGGATTGTGGTCCTTTGGCGCAGGATTTCCTCAAGATGTGGAACCCCAGTCCGGTTCAAACGAGAATGGATTGGTTAGTCCCTCAATGACAACCTTTTTACCCCCTGGTCTTTTAAATGGTGGAGAATCCGCGTGA

Transcript

c0134.g005.t2

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UHC0	Trinucleotide repeat-containing gene 6C protein OS=Mus musculus OX=10090 GN=Tnrc6c PE=1 SV=2
Q9HCJ0	Trinucleotide repeat-containing gene 6C protein OS=Homo sapiens OX=9606 GN=TNRC6C PE=1 SV=4
Q3UHK8	Trinucleotide repeat-containing gene 6A protein OS=Mus musculus OX=10090 GN=Tnrc6a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008140 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00226 all species →	DnaJ	DnaJ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036869 all species →	Homologous_superfamily	Chaperone J-domain superfamily	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR001623 all species →	Domain	DnaJ domain	Interproscan
IPR052068 all species →	Family	GW182 domain-containing protein	Interproscan
IPR041917 all species →	Domain	Trinucleotide repeat-containing gene 6C protein, UBA domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13020 all species →	TRINUCLEOTIDE REPEAT-CONTAINING GENE 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0035195 all species →	Biological Process	miRNA-mediated post-transcriptional gene silencing	Interproscan
GO:0060213 all species →	Biological Process	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18412	TNRC6, GW182; trinucleotide repeat-containing gene 6 protein	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.