Gene detail

Detailed information of c0185.g021.t1 in Palythoa umbrosa

Genomic Location: c0185:186468...194551
NR annotation: CAH3037564.1, unnamed protein product [Pocillopora meandrina]
Species Palythoa umbrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

c0185.g021.t1

ATGACAAATTCCAACGTTGTTTTAGATGATGAGCTTGTTATTAAACTAATCCTTGATTTCCTTAACACCCGAAAACTTCATAAGTGCTTGCGGATCTTAGAGAAGGAAACCGGAGTTGTAAATTGCGGCTATTCAGACGATGTGCTGTTTTTGAGACAGCTAATTCTTGATGGCGAGTGGGAGTCCGTTTTGATTTTTGGACAGCCTTTGGAAAGTGTGGATGGCTTCGATTTGAAGACCTTTAGATACTTAGTACTTAAACAGAAGTTCATGGAAGTTTTGTTTTTCAAATCGGGTATCGGTAGCGGAGCGACAAGCTACTCCATAGAAGATTTATTAAAATGCCTGAGTCAACTCGAAAAAGATATTCCGAGTAAAGAAGAATATGACAAGTTGTGTTGGCTTTTAACAGTACCCAATTTATCAGAGCGGCCTGAATATCGGGACTGGAGTCCAGAAACAGCTCGAATTAAATGCTTTGAAGAAGTTTTGAAAGTATTAAGACAAGTTATTCCAGTGGAAAGACGGGGATCAGATGGTAAAAATGGTAAGGTGTCACAAAATTCCAGCAAAGATCGTTTGGTTAACTTACTGATAAAAGGTCTTTGTTTAGAAAGTTGCATTGAATATTGTCAACAAAGAGCTATCATTGGTGATGATCTTGGGCGTCCTGGAATTAGTATTAATAGTGGACTACTCTCTGGAATGCCACAAGAAACAACGGGAAATTTTTTATCATGGCTTTACAGTTTGAGTCAGGATGCCTTTACAACACCTTTTGAACCACTGGCCATGGAAGTGGAGTTCAGGAGGTTTAAAAATGTAAGGGATGCAAAGGAAGAACAATTAACTCTTATCAGTGACAATGAGATTCTGTCACGCAGTTTATCGCTCAGTGGAAGACCAGCAACTGCAGATGTGATCTCACAGCTGTCCAAGTCAGAGACAAGCTCAAAAACAAGCCAGCAGTGGTCTGTAAGAGCAAAGACCTTTTCTAATTCCTACAGTGATTTTCATTTTCAAAGTATTTCTGGAAAACAATCGAAAAAATGCTTGAATGATAGGGAATACATTGTGGGTCAGTCACATAGTAAAGAAATAGAATCCCAGACTGCTGTAGACTTGCCAAAAGAACATGGATGCCAAGATAAGGAAACTGATGATGGTCAAATTTCAAGCTCTCTGCCTGAGAAAAACCAAGAAGTGAGAAACTCAATTTTGTCTCAAAAACAGGAGCAACGAGACAGTGTCCTCAGTCAACTTGAGGaacatcagaaacagcagaaggaactacagagacaacttatagaactTTCAAACAAATTGGATTCTGATGTTCGGCAGTTTGAGGAGGCTGCCGGTACAAATTCAGAAAAGGTAGAATTGACTGCTTTTGAAAAATCTCAAAATGTGCTAAATTTGCATCATAACGATGTAGAGTTGGAAAAATCATCAGTTGGACAAAAAACCTATGTATTTAATAATATTAAAGACAAACCAACTTTGGAACAACTTAATGTTTTTAGATCATCAGGAAGCCATCAGTCACGCTCACATTTTTCTGCTGGAAATGAGTTGGAAGAAAACCAACAGTCATACACTTTCACACAAGCTGTGACATCAACGCCAGCTGCAAATGAAAAaatgaaaaTAAAACCTCTGAGACTTGAGGAGTCAAATGTGGATGATTTACCAAATAACCCCGGCACAGTTACACCAAGTGCTGAAAATTTTCCTTTATTGACTCCAAAAGAAAACAAGTTATTTGGACCAGGACACTGGATCGCACTTGCAGATGGATCTGGCATCTTAAACACAAGCACCCCAAAATCATGCAGACAGAAGATGTCTGAGACTCCAGCTCCGCTGGCATCACCTGTTCTATCCGCAAGTGGCCAGACTCCAATCACAGGTTCTTACACACAAAGACAGAACTTATCACTATCACAGGCTATAATTAAGGAAAATTGTAACTCTGAGGAGGCCGTACAGAATGGAGAAGTTCCTGCAGAAGAAAAGGAAAAAGAGAACCCGGCAGCAGTTGTCCCCCAGCAGCTTCCTGTGAGGAAAGGTCCCAAAATCAATGGTGTAAGACGGTCACTGCTTCCAGATGGACAGTCGATAGAAAATCCCCCACCTAGTGAAGAAAAGAAAAACACTCaattgagaagtgagaaagttgagagtgagaaagtcagaCACACAGAAACAGTAACCAGTTTGCAACAGTCGAAGTCTAACTCTCCTGTAATTAAGAATAGCAAACCAGCTGTTCGCGAAACACACAAGACTCGCTCTGGACCAGCCTCAAAGTCCAAACTTGCACATGGTAAACAGTCTCAAGCAAATTGTAAACCAGAGGTAAAACAGCCCAGCGGTTTCAATGTGACCTACCACAAACAAGCCACAGCTCCACCGTCAAACACCACAGTTGTAATAGGAGATAGTAATAAGTTGCTAGAGAGACAGCTAGAGATGCTACGGTCTTCCTCTCAACCAAGGTTCTGTACAGTAGCAACACTTAAAGATGCTCAGGCCATAAGAGCCGTGGCTTTTCATCCTTTAGGAGAAATGTTTGCTGTTGGCTCAAATTCCAAGACTCTTAGAATATGTACAACGTCAGGACTTAATTTAAATGGCTGTAGGAAAGTCCCACAGAGCCAAGAAAATCAGCAAGTTCCTCAGCCGACCCTTCTGTACAAGAGAAACAAGCATCATAGGGGCTCTATATATTGCATTGCATGGAACAGTCAGGGTGATCTGGTAGCCACTGGGTCGAATGACAAGAGCATTAAGATGATTCACTTTGATGCTGAAAATTGCACTGAGATAGGAAACGAGTTTGAAATGAACATACATGATGGTACAGTCAGGGATTTATCGTTCGTTTCTAGACCAGCTGGGCTCCCTGTGCTCGTTTCAGGAGGGGCAGCGGATGGAAACATCCTGATATCAGACTGCAGCACCGGGCAAACGGTAGGCACCCTGAAAGGTCATTCTGGTGCGATTATGGCGGTTTACGCAGCTGGAGACGATATTATTGCATCAGGATCAGCAGATCACACTGTTCGTTTATGGGACCTTAGGTCACAGAGATGCATTGATGTCATTGCACCTGGGGACAGCGGTGTAGCTTCAGTATGTGTCAATCATCTGGGGAGCCTTTTGGCATCAGGACACGAAGACGGTAGTTGTATGATTTATGACATCACTGCTGGCCGAAGTCTTCAGCTGTTTAAGCCACACACCATGGACTGTCGCACCGTCCGCTTTTCACCAGACTCCCACTTCCTGCTCTCGGGCTCCTATGACACCAATATTCTGCTCATAGATGTGAAGAAGAACTTGGAGGGCAATAAACCGCCGTATTATGTCGTAGCAGAGCACAAGGATAAAGTTATTCAATGCCGGTGGCATCCCAACCAGTTGGCTTTTCTGTCATCTAGTGCCGATAGGACAGCAAGCTTGTGGACACTGGAATGTTAG

Transcript

c0185.g021.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O94967	WD repeat-containing protein 47 OS=Homo sapiens OX=9606 GN=WDR47 PE=1 SV=1
Q8CGF6	WD repeat-containing protein 47 OS=Mus musculus OX=10090 GN=Wdr47 PE=1 SV=2
O15736	Protein tipD OS=Dictyostelium discoideum OX=44689 GN=tipD PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004969 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17814 all species →	LisH_TPL	LisH-like dimerisation domain	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR040067 all species →	Family	WD repeat-containing protein 47	Interproscan
IPR006595 all species →	Domain	CTLH, C-terminal LisH motif	Interproscan
IPR006594 all species →	Conserved_site	LIS1 homology motif	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19863 all species →	NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24746	WDR47; WD repeat-containing protein 47	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.