Gene detail

Detailed information of c0188.g013.t1 in Palythoa umbrosa

Genomic Location: c0188:264366...276077
NR annotation: XP_027056549.1, general transcription factor IIH subunit 2-like [Pocillopora damicornis]
Species abbreviation PUMBR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JIB4	General transcription factor IIH subunit 2 OS=Mus musculus OX=10090 GN=Gtf2h2 PE=1 SV=1
Q13888	General transcription factor IIH subunit 2 OS=Homo sapiens OX=9606 GN=GTF2H2 PE=1 SV=1
Q2TBV5	General transcription factor IIH subunit 2 OS=Bos taurus OX=9913 GN=GTF2H2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006027 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07975 all species →	C1_4	TFIIH C1-like domain	Domain	Interproscan
PF04056 all species →	Ssl1	Ssl1-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR046349 all species →	Homologous_superfamily	C1-like domain superfamily	Interproscan
IPR004595 all species →	Domain	TFIIH C1-like domain	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan
IPR007198 all species →	Domain	Ssl1-like	Interproscan
IPR012170 all species →	Family	TFIIH subunit Ssl1/p44	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12695 all species →	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000439 all species →	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03142	TFIIH2, GTF2H2, SSL1; transcription initiation factor TFIIH subunit 2	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.