Gene detail

Detailed information of c0222.g003.t1 in Palythoa umbrosa

Genomic Location: c0222:42404...67619
NR annotation: CAH3148466.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation PUMBR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

c0222.g003.t1

ATGGCGAAAGTAATGGTTTCTCCGGCTCTTTATGAtttctcCGATTTGAGACCTTCCTCGCGCGCGCTTACGATAAACCCTCGACCCAACTCGAGTTGTGCGTACAGACGGCCACAATCAGCTGTGAGCTCTTCGACAACCACGTCTGAGCTAGACATTTCACCCAGAAGTCAAGCTTCGCCACAACAAGCATCACCAGGAAGAAGGGATTCTGTTTTTAGCTCTAATTCAAGTTTTGGCGGATCGCAGAGTCCCAACTCGAAGCTGAGTTCTATTGAAGTGGAATCTTTGCTGAGAGAAAAGATCAgaggaagctttgccgaaataaaGCAGGCTTTCCAGTCACTGGATGCACAGAAGTGCCTGTCTGTCACCAAGACTGAGTTCCGTCAAGTACTGGACACATTTTGTTTTCCCCTCACTAAGGAACAGTTTAATCAGCTGGTCAAAAAGATCGGTAGTAATAGGGATGGAACAATATGTTATGGTGAATTCATGGATAAGTTTTACCATCGTGGAGGAACACCTGATGGTTTGAAGTGGCTTAGCAGCTTGCACAAATATCAACAAAATAAAACACCAACAGAAGATTATGAAGagattgaaaaaagattaaaaacaAAGATCAGTGGTCAGTTGCAGAGTGTCTTGAAGGCCATGAGACTGTTTGACTACAACAGGGACGGACGCATGCAAAGACACGAACTGAGGAGGGTGCTTGAGAACTTCTGTTTCAAATTATCGGATGCACAATTTGACAAATTGTGGTGTAAATATGACATGGTCCGTAATGGTAGCACTCTGGAATACATGGATTTCCTCAAGCGGCTGGGAATTGAGACCAAGCGGAAAGGGTTTGCTGGAAATGCCCTTAAAGCCAGTGTCACGTCTGATGAGAACCAGCGAGTAAAGTTGGCAGCAGTAAACAGCAGAAGACCTCATACCCAGTCCAGCGACAATAGCACTGAACCACCGACAACACTGAGGGACCTGGAACAGAAGCTTAGAAGAAAGATGGTTGATAACTTTGGGAACATCAGCCGAGCGTTTGTAGCATTTGATAGAAAAGGCGACGGGTTTGTTACACTCGACGAATTAAAGAGAGTGCTGTTCCACTTTGCTTTCCCCATGTCAGATCATCTGTTTGAGCAGCTTATGGATAGGTGTGGCATTCGGGCCAACCACAAAATCGCTTACGAACAGTTCCTAAACAAGTTTCAAGAACCCCGCGCTGCTGGCAATGGACAAACCATTCCAATCAAACATTATCCCAGGGTCAATCCAATTCGTGAAGCCGAAGGTCCACTGTCTACGGAGGATATTTGGAATCAGCTTCGTAAGAAGGTCTTGGACAGCTTTACAACAGTTAAACAAGCTTTCCTTGTTTTTGACGATAATAAAGATGGACGGGTAACGAAACGCGACTTTAGAAGAGTGCTGGAGAGTTTCTGTTTTCGAATGAACGAACCACAGTTCCAAGAGCTAATGGCACGAATTGATCCACACAACAAGGGCTATATTTCCTATCTGGAATTCTTGGAAGCGTTTGAACCCCGAGAAACCACAGAGGCTCACCCGTGGCTCAATGGAGACAATTCACTGAAAAGCGTCTCACCACCAGCTATTGTTGCATGGTCCACAGTTGAAGACATACTACGCTCTAAGATCACTGAAAATTGGAAGTCAGTAGCTGCAGCCTACATGAAGGTTGATGAGAATCGAGACGGAAGTATCTGCAAAGATGAGCTGAAGAGGTTGCTGGAAAAATACTGTTTGCCTTTATCAGACGATCACTTCGATATGTTGTGGAGTCGCTGTGACACAAATGTTGACGATACAATTGACTTTGAGGAGTTTCTTAATAAGCTGGGTGTCGATATTGTGGTAGGTGATTTCCAAGGTACAAGTACACGAATTCACGATGAAAGCGAAGCAAGAGCTAACTTCATGAGAGAAGATCAGACACTTAGGCAAGAGCTGGCCGAGGAACGAGCCTTGGGCCTTACTGGACAAATGGATGCTAATGATGTCATGGAAATACTCAAGGATCACATTGCCCAAAGATCTTCTAACTTCCGAAAAACGTTTGTCAAGTTCGACGGCGATGGTGATGGAAAAATATCGCGCAAAGAATTTCGCAAAGTCATTGAAAGCCTCGGTTTTTATATGACGGATGAGCAGTTTCGCCTACTTAGTGCAAGGTTGGGTTTTCACAAAGGAAAATTGTCGTACATGGATTTCTTGGATCAGTTCCAGGATCGTCGCACCTTTGGAGTGGGTGAAAGAATTGTATACCAAGGCCAGAGACACAATCAACCGGTGCCTCTGGACGACGATATGGATGCAGTTGAAGTAGAAATAAAACTGCGGAATAAACTTAGGGAATCTTTTAAGGATCTTCGGGAAGCGTTCCACAAGATTGACTTTGATCGTAATGGATTGGTTACAAGAGCGGAATTCCGTCGCATTCTTGACTCGTTGATGTTCTCTCTATCCAACGAAGAGTTTGACAAGTTGATGACTAAACTTGGTGTGAGGAGAGGTGGCAGACTCAACTACGTCGACTTCCTCAAGCAATTTGAACACACAGAAAAAATCGAAGAGGGACATCCATGGCTGTACTCCAACCACAGTATCAAGGAAACTCGCGATATGGCTTACATGACGGCAGACGACGCTGACCGTATAATCAAACACAAGGCTCAGCAGCAGATGGACAGTGTAGCCAAGACGTTTCTGGCATTTGACCGAGATGGTAATGGAGTTGTTACTAAGAAGGAAATGAGAAAAGTTCTTTATCGTTTTCAGATTCCAATGGAAAAGGAAGAGTTCAATAAATTGTGGAAAAGGTACGACACGGACGGCAATGGTCACGTGGACCACAAGGAATTCTTAGCCAAACTCGGTGTAGAACTGGCTCCGGGTGATTTCCACGGACCCAGCACTAAAATTACAGAGCAGAGTTATGATGCCATGGCCAAGTTCCATCAAAGTCAAAAGGAAATTCACGAAGCATCGACACTCAACCAAGCGAACACCACGTCATTTCTAACAGCCCTTGAGGTTGAACAGCAGCTGAAAGACAAGTTCCGTGATGGTTATGAGAGTTTCAGAAAGGCATTTGAGGCTGCAGACACCAACAGAGACGGTTATGTGTCAAAACTAGAGCTACAAAAAGTGTTGTTTGACTTCTATTACTTCCTCGACGACGTGCAGCTGGGAATTCTGCTAGATCGGTGTGGTTTGTCAGGGAAAAGTCGAATGTCTTACGAGAAGTTCCTGAGCGCATTCCAGGACAATCGCCAGTCAGGTTATGGGACTCTGGACACTCCCTTCCATGGGCCTACCCCGGTAGTATTTGAGAGTCACGAAAACCTCCCCCCTGACCGTGCCATAGCAAAGCTCAGAACTGCCATCGGTAGTAACTATGACAACGTGAGAAAGGCATTCATCGCTTTTGACCGTAACGGGACTGGGCTCGTTACAAAACAGGACTTACATCAAATTATTAACGCATTTTGTTTCTGGATGAGTCCGAAGCAGTTCAAGGCGTTATTGAAGCAAGTAGATGTTCTTGACGGTGATTTGATTGCATATGAAGATTTTCTGCAAAGCTTTCAGAAATCAGATGAAGAGGCGAGTAGGCGTTGGCTGGAAAATCTTCATCCCTCAACATCGAGTAACCGACGAGGAAGTCTCAAGCACAAGCGGACCATGTCTGATGAAGAAGTGGATAAGAGAATCAGTGAAGTTGTTGTAGCAAGGTTTTACAGTTTCGCAAAGGCATTCACTGATAACGACATTCACCACTGGGGGAGTGTAAGTCGTGATACGCTACGTAGGATTCTCAATGAGCACGCGTTCCGGATGAATGACGAGCAGTTTGATCACGTGTGCAGCAAGTTTAACAGTGACCCGGATGGAGCTATTGACTACAAAGAGTTTCTTAAGAGCTATTCCAGCAGGCCTGGCGTGCGTCGAGCCTCGTCTGCAACTCCTACCAAGTCACGTGAGCGACAGTCAACGTCCGAGATGCCAGTGACAATGCGGTCAGCGGTTTATTCTTCAACGAAGCGTTTTTCCCGTGATAGTATTAGACCAGCGACATCGGCAAGTGATATCGAAAGAAGGGTTAAAGACCAGGTTTGTCGTAGTTGGCAACAGTTGCAAAAATCCTTCAGAAACGCAGACCCAAACAACACTGGCGCTGTGTCTTTCGAGCAGCTTAAAGAAGTCCTGTTGAAACACAATGTAGCTGTCACACCGAGTGAGATCTTAATTTTGTGTAGAAAACATGACAGCGAAGGAAATGGAAGAGTTGTTTATAAGGATTTCCTCAGGCATTTTGTGCTCACGCTGAAGCCGAGAGAAACAGCTCTTTCACGTCCGAAACTACAACCGAATAAAACATTGGTGTCGCCAGGGGTAGGAAGTGATCAGCTCGTTGTTCTTATGGCCAAAATTCGTAGTCAAGTCCGGGAAAACTGGAAGGAAATGAGAAGAGCATTCCGTGCTCTGGACAAAGCAGGAAACGGAACATGTGATCTGGCGGAGTTCAGACAACTCTTGAAACGGTTTAAAATTGACCTGGATGAAGAAGACTTTTTTCATCTGTTCTCATTTTACGACAAAAACATGAACGGAATAATATCATACAATGACTTTCTTAGAGCACACTTGGAGTAG

Transcript

c0222.g003.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5THR3	EF-hand calcium-binding domain-containing protein 6 OS=Homo sapiens OX=9606 GN=EFCAB6 PE=1 SV=1
Q6P1E8	EF-hand calcium-binding domain-containing protein 6 OS=Mus musculus OX=10090 GN=Efcab6 PE=1 SV=2
Q5RE62	EF-hand calcium-binding domain-containing protein 6 OS=Pongo abelii OX=9601 GN=EFCAB6 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005731 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF08976 all species →	EF-hand_11	EF-hand domain	Domain	Interproscan
PF00036 all species →	EF-hand_1	EF hand	Domain	Interproscan
PF13202 all species →	EF-hand_5	EF hand	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052603 all species →	Family	EF-hand calcium-binding domain-containing protein 6	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR015070 all species →	Domain	DJBP, EF-hand domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20875 all species →	EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23851	EFCAB6; EF-hand calcium-binding domain-containing protein 6	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.