Gene detail

Detailed information of c0403.g009.t1 in Palythoa umbrosa

Genomic Location: c0403:100333...101374
NR annotation: XP_032233817.1, 50S ribosomal protein L16 [Nematostella vectensis]
Species Palythoa umbrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B2V7K6	Large ribosomal subunit protein uL16 OS=Sulfurihydrogenibium sp. (strain YO3AOP1) OX=436114 GN=rplP PE=3 SV=1
O51438	Large ribosomal subunit protein uL16 OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=rplP PE=1 SV=1
B7J250	Large ribosomal subunit protein uL16 OS=Borreliella burgdorferi (strain ZS7) OX=445985 GN=rplP PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006636 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00252 all species →	Ribosomal_L16	Ribosomal protein L16p/L10e	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036920 all species →	Homologous_superfamily	Large ribosomal subunit protein uL16 superfamily	Interproscan
IPR000114 all species →	Family	Large ribosomal subunit protein uL16, bacterial-type	Interproscan
IPR047873 all species →	Family	Large ribosomal subunit protein uL16	Interproscan
IPR016180 all species →	Domain	Large ribosomal subunit protein uL16 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12220 all species →	50S/60S RIBOSOMAL PROTEIN L16	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0005762 all species →	Cellular Component	mitochondrial large ribosomal subunit	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02878	RP-L16, MRPL16, rplP; large subunit ribosomal protein L16	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.