Gene detail

Detailed information of c0495.g003.t1 in Palythoa umbrosa

Genomic Location: c0495:46277...67259
NR annotation: XP_022779730.1, uncharacterized protein LOC111321185 [Stylophora pistillata]
Species abbreviation PUMBR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

c0495.g003.t1

ATGAGTCAAGCCGAAACTAAAAAGTGGGGTAAGGAAGATTTTTGGGGCCTGTCTTATGAGTATGACCCACAGTGGATATTCGATGAGGAACAAAAAGATATTCAAAGAAAATTGATGGAGGTCTGCCGAACAGTGATAAGACCCCAAGCGATTGTATCAGATGAAAAATACGAGTTCCCCAGAAAGAGTATCGATGCACTAGCTTCCCTACGCCTTCTGGGTCTCATTGTACCTAAGGAGCTCGGTGGGCGTGGTCAAAACCACATGTGTGCTGCCATGGTAGTCGAAACTATTGCTCGATATGGATGCGCAAGTACAGCCATGATATATGTGATGCACTGCTGTGCAGTTGCCAATTTGCTTCTTCATCACCATGACAACAAACAGTTTCAAGACCTGCTAAGACGGTTGGATGACGACAAACTGCTGGGAACAATAGTTCTGAGTGATCCCACTACTGGCAGTCACACGTGGTATGCAATGAGTTCCAAAGCAAAACTACTAGAAGATGGCAGTTATCAGGTGTTAAAATATTGTTCTTGGACCACAAGTGCCGGCTTTGCTGATTTTTATACAGTGGAGGTGACAAGTCCTAACTTTGGTGGCAACTACATGAATGAGAGCGTCTTTCTGATGTTCAAGGATGAAGTTCGCAGCCGACCTAACGAGTGGTCAGCGTGCGGAATGCATGGAAATTATTCTGCCCCGCTCATCTGCGAAGCAGTTCTTTCACCGGACAGATTAGTCGGACCCATTGGTGATTTTCCATACAGTGGTCTAGAGGTCGTCAACCCTTACTTTTTACTCCTCTCTTCCGCCTGCTGGAACGGGACCGCTATGGGGTGTATCGATATTACTAGGAATCACGTGATCACCAAGCGCCATTTTGATCTAGGCATGCGCGTTGGAGACTATCCCATTATTCAGGACTACATTGGAAACGCTATTGCAGATACAAACGCTTGCCGTATGTTACTGTACAGTACTGCCCAAGGATTGGACCAAGTCACAGCTAACAGTGACTGGGAAATTTACAGGGACAAGTCTAAACCAGTGATGAGGCGAATTTTGTTGGCTCACTGGTGCTCGCAAGTCAAAATCAAGGCCGCGTCGAATGTCAATGTAGTAAGCGACAAGATGATGAACGCCTGCGGTGGGACTGGGTACAAAAGCCAACTTGGACTTGAAAGGCTTATGAGAGACGGCAGGGCTGGATGGGTCATGGGTCCGAGTAACGAGGTGGTGCAACAAATGATAGGGAAAAGTGCTCTGTATGGAATGGAGTCAGTTGACCTGTGGGGCCAGAAGGTTGACACACGACGCCTCAACTCTCAGTTGCGCAAACTCAGTGTCGATGAGAAACTCAAATTTGCGGATCAGTTACTACGCGAGGTGCAAACAAACTTTACAGACGAAAGTAACAATGAAAAAGTTGATAGTAACAACAATATCAAAGCCCAACTCAACGACCTTACTACACTTTACGACAGTGTAATATGCAAcaacaacaacgacgacgacgaaagaagcgatgttgacgttaataatgactatgaccaggacgacgaCAGTTGCAAAAGTTACAATGAGGTCGACGCTAACAGCCGTAATAGCAGTGGCTTTGAGAATTGCGACAGCAGCAGCAATGGAGACGCAAAGTTCAATAAAACAGAAAACGATTATAGTTACCAAGACACTGAGTTTGACAACCCTTTCAACACCAATCCCCCAGAAATACCTGGCCCTTTTAAGAGTGATGATGGCACGTGGCATTATCCCGCCCTTGAACCAGATTGCTACACTCCCCTTAAAATGACGTCTGTCAATCGACTGGACGCGCAGCAGTCTGAGTACGAGTTTGCGCTGCCACGTTCCACAGACTACACGGGTTGTATTCCCGGCCAGTACATCAAGGTCAGGATCACAGCAAATGGAAAATACTGCGAGAGGTTTTTCTCTCCAGTGTCAGCAACCAAAGAGTTTGGGAAAATCGTGTTGATGCTTAAGTACGAGACGAATGGAGAGCTGACTAAGCGATTTCAGGAATTGGAAATAGGAGATACGGTTGAGTTTCGAGGTCCATGCGGTGGATTTGAATACAGTCCCAACTCGGTTGAGTACTTGAGCTTACTGTCCAGCGGTAGTGGCTGCGCTCCATTTATTCAAATTATCCGTGACGCCATCGGGAACTTGACAGATCAGACCAACATTTCGATGCTGCATTACAGTGAATATGAGGACGAGATTGCATACAGAGCTGAACTGGAGGAGTACACGAAGGGAAACTGTGGATTTAATCTGTTCTACACGGTAGGACAGGTGGAGGATACAGAAGAATGGAAGGGAGGGGTTGGTTATATCAACACCAAAGTGCTGTCTGATCGTCTCCCTCCCCCAGAGGTGAAGTCGCACAAGATTCTCGTTTGTGGTGGTCCATCAATGGTGTGCAGTGTCCTCCAAGACTTGTGTGACCTTGGCTACAACAGCGAGAATATTTTTGTGTACGGGCAGTTTGGCACGGAGCAAGTGCGGGCAATTTACGGCAGGCATCGTAAACTCTCATCCCACAAACTAGTTTAA

Transcript

c0495.g003.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UR35	NADH-cytochrome b5 reductase 1 OS=Mortierella alpina OX=64518 GN=CBR1 PE=2 SV=1
Q4PGW7	NADH-cytochrome b5 reductase 1 OS=Mycosarcoma maydis OX=5270 GN=CBR1 PE=3 SV=1
P00387	NADH-cytochrome b5 reductase 3 OS=Homo sapiens OX=9606 GN=CYB5R3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005572 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00441 all species →	Acyl-CoA_dh_1	Acyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan
PF00970 all species →	FAD_binding_6	Oxidoreductase FAD-binding domain	Domain	Interproscan
PF02771 all species →	Acyl-CoA_dh_N	Acyl-CoA dehydrogenase, N-terminal domain	Domain	Interproscan
PF00175 all species →	NAD_binding_1	Oxidoreductase NAD-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039261 all species →	Homologous_superfamily	Ferredoxin-NADP reductase (FNR), nucleotide-binding domain	Interproscan
IPR009075 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, C-terminal	Interproscan
IPR017938 all species →	Homologous_superfamily	Riboflavin synthase-like beta-barrel	Interproscan
IPR037069 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily	Interproscan
IPR008333 all species →	Domain	Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain	Interproscan
IPR046373 all species →	Homologous_superfamily	Acyl-CoA oxidase/dehydrogenase, middle domain superfamily	Interproscan
IPR036250 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase-like, C-terminal	Interproscan
IPR009100 all species →	Homologous_superfamily	Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily	Interproscan
IPR013786 all species →	Domain	Acyl-CoA dehydrogenase/oxidase, N-terminal	Interproscan
IPR001433 all species →	Domain	Oxidoreductase FAD/NAD(P)-binding	Interproscan
IPR017927 all species →	Domain	FAD-binding domain, ferredoxin reductase-type	Interproscan
IPR001834 all species →	Family	NADH:cytochrome b5 reductase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19370 all species →	NADH-CYTOCHROME B5 REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016627 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for c0495.g003.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.