Gene detail

Detailed information of c0715.g003.t2 in Palythoa umbrosa

Genomic Location: c0715:9036...77231
NR annotation: XP_031572885.1, daple-like protein isoform X1 [Actinia tenebrosa]
Species Palythoa umbrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

c0715.g003.t2

ATGGCCACAGTAAATGAATTCCTACAAAGTCCGCTTGTAACATGGGCTCACACGTTTAGCGGCAACTCAAGGCCTGAAACAGTTGCAGATTTCGCTGATGGAGTGTTTTTGAACGAGATCATGGTGGAAATCGATCCAACATATTTCACTCTTACCCGTGTGCAACATAACGTTTACGGCGACATAAACAGTCGCGTTCAGAACCTAGATACCCTGGTGCGCCATCTGAAAGGTTACTACCAGGAAAGGTTACAGCAAGTTGTGCTGGCTAGAGTTCCTGATATTGTGTTGGTGGCTCATGATCCAGAAAGTGAAGCAAGCATGGAGGAGTTGACAAAGATTCTACTGCTGATGTTAGGTGTAGCTGTACAGTGTGAAAACAAGGAACATTTTATTGGAAAAATAAAAGAGTTAGACTTTGAGGTTCAAAGATTGCTGGTGGACTGTATCAAACAAGTTACAGATAACTCGGATAATGTCCTTCCATTCCGCCTAAGTGAAATAGCAGAGTACCCAGCAGAGCAACTTATACTGATGGCAGAGGCTATGTATTACCACATAGGGCAGCTGGTGGATGAAAGAGATGCTTCTGTTGGAATGATCACCCATCTGACATATGAAAAGGATTCATTGTTGAAAGAACAAGAATTGCACCCGAGGAGTTCTCTTAGTCCACCATTGAGTCCGAGACATTCCTTTAAAAAGACATCTCCAGCGCTCACGGCCACCAAGGAAAAACTAAGACTACTTATGGAGGAAGTGGAGGAAAAGAACATCATGATTCAGGAGCTAAGGGATGAGTTACTGTCGGGCAAACGGACGATAGAGAAGCTTCGACAGGATAACAAAGATTTATCTCAGGATGCACGATGGGTAAAAGCTTATCGTGATGAGATTGACATGTTGAAATCTAAGGCTGATAAAGTGGAAAAACTTGAAGCCGACACTGTGAAATATAAAGAAAAGCTGAGAGACCTTGACTATTACAAGAAAAGAGCAGAGGAACTGAAGGAACAAAATGAGCTTTTATACGACACTAAAGTTGTTCTGGAGGAACAGCTAGTTGGTATGAGCACAAAAGATGAAAAACTAGAATTATCTGAAGAAGCAAATAAAAAGTTAAAGTCCCATATTCATGAACTTGCGGAGGAGCGACAGTTTGATCAAATCAAGTTAAAGGAAATAATGGAAGAAAATGCCCAGCTGGTGTTAGACAAACAAAACAGTATGGCTGAACTTGTTGCATTGAtggcagaacttGACGTTCTCAGAGGAAAGGTGTCTCCAGGTGCAAGTAGTCTCGCCAGTGAATACAAGGAACAGAGTTCTGTGGAAATATTGCGACTACAGAAAGAAAACCAACATCTGCAAAAATCGATTGAGAACCTCAGGAATTCGAGTTCAAAAGTTGAAGATCTAGAACGAAAAAACAaagaactaaaaaatATGTTAAAAAGTGACAAACAGGAGACACACAGTTTGAATGAGGAGCTTGCTCAAGTAAAGGCCAGAGCGAAACAACAGAGCTCTGATATTGTGAAACTAAACCAGAAATTGGAGGAACTACAGCATGAAGCCTCGTCGTCTAGCGATTTGTTATCTGTTGAGCCGCAACAAGCAAATTCGTACCTGGTTGACTCGAACAGACGCCAGCGGTGCTCTTCAGATGATGAAAACATTGTCCGTTTAAAACAGCAGATGAAGGAAAGTGAGAaaaaagaaaaaaaGCTGTGTCAGCAACTGGAGGACAAGAACACCAAGATTGCTCAGTTGACTGAAACTATTGAAGTGAGAGAAAAGAAACTTAAAAGCCTCGAAGCAAGGTTAGAAGAAAACGAGAAGGaacaacacaaaacggaaaaacAAGTGAAAGGTCAAACGAAAGAAATATCCGAGTTAGAACAGAAGATTGAAGAATTGAAGTCTCTGAAGACTAAAGACCAAAACAAACTGAAATCAAAAGAGAGAGAATTAGACGAACTGAAAAGCAGGTTGGATGACACACTAAGTCACAAGAACAGGTGTGATGAAAATCTGAGACGAAAGGAAAAAGAAGTTTACGATCTTAAGAACAGGCTGGACAAACTGAATGACGCTAATGATAGGCTCGTAGAGGACGGACGAATCAAGGAACAGAAAATAGGTTCACTGCAGAGAAGAACGGAAGAGCTTGCCGGCTCCTTGGATGAAAAACTAGACTATTTCAACAAAGGCTTGCGagaaaaagagaaagagaagaaagaacttgaaagaAGAATTGAGTCGCTTGGAGATTGCACGGAGGAAGTGAAACGTTTAAAAGAACTTATTAAACAGAAAGACGCTAAACTGGAAAATTTGAATGTGACAGTACAGGAAAAAACTGGTAGACTCCATGATCTTGAAACAAGTGACAAAGACAATTATCTTTTCAACAGATTTGAAGACCTAGATAACGGGAACAAGAAGTTGGTTCACACCTTGAGACTAAAAGAAaaaaaGATAGAGTCTCTGGAGGGCAGTCTTACTGAAGTGGAGATGGACATGTCAAATACGTATGTGAAGGAGGGTAAAATTGCAGAAATGAAGAAGTCTATTGAAGGAAAGGACAACAAGCTTCTGGAGCTTGAGAACAGACTGGAGGATCTGGTTAGTTGCAACAACAAGATGCAGCACAGCTTGAAACTGAAAGATGAAAAGCTCCAAGACCTCGAAAAACAGAATCAAGAGCTTGAAgaaacaacagcagaaaaaaCCAAGCTGAGCCagagcttagagcagaaacttcagagaatactaAACATGGAAACGAGAATTGAAGATCTGACGAATGAAAATCTACAGATGAGGAATAACGTTGAAGTGAAAGATGGCAAACTACAATCTCAGGAAACAAGAATCTTTGAACTGGAAGaatctctGAAGTCATTTCAACTTATTGAACATGACTTGAGGCATAAAGATGACCGAATCACATCTTTGACTCGGATCATTCAAGAAAGAGAAGAGAAGCTGGCTGAATTGGAACACAGGTTTGAAGATACCCAGGCACACAACCACAAGTTAAATCGCAGTGTTAAAATTAAAGACGACAAGATCTCAGTACTTGAGAACAGATTAGAAGAATTTGAAGGCCTTACTGCTGAAAAACAAAAACTAAGTCAACTTCTGAAGCAGAGAGAAGAAAAGATAATTGCGTTAGATAGCAAGATTGTTGAATTAGAAGATGTTTTAGTCGACAACGAGAAATTGTCTCATAGTACAAAACAAAAGGATGAAAAAATTCAGAGACTTCAGGAAAGACTGGATGAAGTGGAGGATGCAGTTAAAATGAACTCGAGGCTTAACCACTTTTTGAAACAGAGGGATGAAAAGATCAAAAGTCAAGATAACAGGATGAAGGAGCTTGAGTCTTCAATCGATTGCAGGGAAGAACAGCATCAAAAAGAAAAATCTCATTTTGAAAACAGAATAAGAATACTGGAAAAGAGTCTTGATGAAGTAAATCAAGCTAAGGTCCAACGAACAAATAGTGTAAAGAGAAGAGACgaAAAGATAGTGGATTTGGATAAAAAAAGATCAGCATTAGAGCAATACATACAGGAAAGAGAAGGAAGAATACAAGATCTTCAAACCAAGCTCGACGGCTCGTCTGATCGATTTAGAAAGCTTGACCTCTCTGTTGGTGAGAAGGAAATGCGTATTGCGGAATTGGAAGCCAAGTTGCTGGAAGCTCAGGATGATGCTCGCGAGAATCGTAAATTAAACCAGATAATGAAGACAAAAGATGCAAGAATTGACAGCTTGGAAACGAAGCTGCAAAGTGTTGAAGGGTCGTTAAAAAAGTACAAAGTCGAGTTACAAGAGAAAAATGAAACACTTGAAAATGTCCAACAGAGACTGGAAGAGACATTAAACCTGAACAACAAGCTCGACCAATCCGTTCGTAAAAAGGAAGAGAACATTCGAACTCTTGAAAAACACCTTCAGGCCATCGAGAAGAGAGAGGAAGAACTCGAAGAACTACTTGAAACAAAGGCAGAGAAACTATCTGAATACAAGAAACGGGTGCTTGACTTGGAAGATGTGATGGAAGGAAAAGACGATAAAATAAGTGAGCAACAAAAAAGGTTGGACGAGGTTTTAAAGCTAACAAACGCCGACCAAAAATATCGCGTTACCACTGAGGAGAAAGATAGCAGGATTATGCAGCTTGAGAAAGATATAAAAGAACTCGAAGTCAAAAGCGACCTTGTCAAATGTTCAACTGTTGAAGTTGAATATCTCAACAACGTAGTTAAAACCCAGAAAGAAAAAGTTCAAGAACTAGAAGCGAAATTGGAAGAATGCATGAACCGTAACAAGAAGCTGGATCTTGGAGCTAAACAAaaagaaaatacaataGAAACTCTTGAAAAACGTATTGAGCTTCTACTGGCGAGTCAGGATACCTCGGATAAGTCGCAGAGCAAAGCATTACAGCGAAAAGACTCCACGATAGCAACAATGAGTCAAAGCTTACAACAACAGGAATCTGAGATCATGTCTCTTGAAAACAGACTTGAGGAAGCTGTCGCCCGGGCGGACAAGTTGAATCACACACTTGACCAGAAAGAAGAGAGAATTAAATCTTTAAAATCCAGACTTGAAGACGCGGTTCACCAGAACAACAAACTAAAGCATAATCTTGAGTTAAAGGATGACAAAATTCAGGGACTGGAGAGGCGGCTTGAAGATTCAGTGAAGGAGTTTGATGTTTTAAGAGGGAACCTAGCAGTGCTGGATAGGAAACCTGAAGGAGAAAAAGACACCAGACCAAAAGGTTCTTCGTCTCAGACGATCATTTTCAAGCCTGCTAACAATGCAAACAACATGAAAGCCGTGGAGCTACTTGCGGATGCCGAGAGACGTTTGGAGGAACTTAATGAAGAAGTTAGAGCCTTGGAGAAACAGAATGCTACGGTTGGTGCTCAGAATGAAGCCATGTGTGCTAAAAATGCATCGCTAGTGATTGAgaatgaatcgctGAAGAATGACCTAAAAAACCTGAAATCCGATTATTCCAATCTACTGCTTGATGTTGGTGAAGCGCGTGAATATTACAACCAGGTCGATATTTCATCATCTAAAATGGTGCACAGGTGCGAGATGCTTGAACAGTTGAACAGTACATTGGAAGAAGAAAACAAAGCTCTTATGGACCAAGTGACCAAATTAGTGTCCCAGAATCAAGATATGTTGATTAGGTCGTTGGACGACAAAGAACAATCCATGGAAGACGAGAGACTCTTTTCTGATCGGCTCTTTGCGCTACAGAGAGAGAAGGAAAGATTAGAAGtacaagtacaaCTTGCCAACAAAGCACTGGCTGAGTGCACACCAATAAAAAAAAAGAAGAACGTGTTCAAACGTGGGGCTCACAAAATGCTAAAAGCAACAGGATTGAAGAAGAAAAAAGATGAACCTAACAAGAAAGGGAATGTTCAGCTGTTGAAGGTGGATCACAGCCCTTTTGCGGAACATTTTGATGCATATCGACCGGTTAATGCTGATCTGGAATCGGATAGCTATTCTTCAATAAGTAATGTGACCCCCTTAAGAAGCCGTCACGATGATTCCAGGAGCAGTTTTGATTCACGGGAAAGTACTGCATCAGTGGACTCCTATAATCTTCCAAATCGTTCCGGTCTTCCTGTCTCCCACTCTGAAGGTCATTTACGGCGAGCAAGAACAAACGCAAACATGCAAGCTGCTTCACCAGCTGACGTGGTTCAGCTTCGCAGAGGAAGTCAAGATGTTTCTGCTTACCATGCACGTCATGTGCGTTCAGAGTACTACGGGGATCGTGATTTCTCGCCAGTAGTGAAACTGCATCGTCCAAAAAGCTTGGATGCACTAAACAAAATTGTCGATAATGATTCAACTCTGTTGCCAGAACTACGGGCCCGAGGTAACAGTGACAATGCGAGCAGGTTAAATACGGTACAGACTGTTTCTTCTACTTTGAGAAAAGAGCTGCAGTTTGTCTCTTCGACCCCAGCCACACCAACTGGGACTAGGCGGTCACCACCCAGACAAACAAGTAGTCCACGTGTCTCAACCGTACCAAGTCCGCGTGCCAGTCCTAAATCCTCGCCAACACCCAAACGAAAATTCTACCCTAGTCCTCCACCTTCTCCGACAATGTCGCGTTCCAGTGTAGGGAGTTTTAATAGCGATGCTGTTCCTGTCAAAGAACGAAGTACGGAAATACCAACCCGTGACAGTTGCTCAAAGGTTCCTGCCACGATACCTTCTACAGTTGTGAGAGTTGGAGCAACGTTTGCTCTCGCTTCACCTTCCTCGTCATCCATTACTGTTTCTCAGGTCCGCGATCCCCACGATGTTGCAACGACACCAGTTTCCTCTTCAATGACAGCAACCCCTGGAAGAGAGAGTGGCCGTATGAAGTCATCCAATGCTTCTCCAGGCAAATTGTCTGGTCCTAGAGTAACTGTAGATAAAGTGACACATATTTCAGAAACCGACACAGCACCTATTGAGAAGTATGTGCGCGAGATGGAGCGCACCAAGGAGTTAAACCGTGGGTCCTTCAGAGGCTCCAACCGTTCACTAAGTAGTAATtccttacgaggttccaatcactcactCAACCGAGTAACGGCGTCCACTTCCACTCTACCGGCACGCCAAGGTACCACAGTGTATGCAGTGGTCTCCTCCACAAACAACCGAAAAGAGTCGATTAAAAGTGCTGAAAGTGTCGTAATTGATGCAACtggaagagatgtaagtgttgcACCAGCTGACAAATCTTTTTCGGGACCAGGCCAGTCAGATGCAAACCCAAGTGCGCCAGTGCAACCAACCGTCATAAAAGCTCGTAGCAGCGGAGTGAGGATCAATGCAGATGAAACGTCCACACTACCGCCAACGTCCAACCTGACAAATGAGATTCAAACTAGAAAGGAGAATTCTCAACATGAGTCAAACCAAAACCATGTCAGAACGTCCTCATCACGTCAACGTTCAACATCCGGACGCTCAATTACGTCACAAAGCCTCGCAGCGCAAACTCGAAACACTGGGGATGACAAATTAGGAGTACAAGCAAGAGTTCGAGAGTTTGAGAAACAAAACACAGAGGCGCATTCAATTCGGTCACCTTCAAGTTCGGCGCTTGCTGGTGTACAAACAGAAGATGAACACAGATCACGTTCTGTCAACTCTGACGCTTCGCCCGGTTTTAGAAAGCAGCCAAAAACGAATTCCCATAAAAAGAAAGACGAACAATCACAGTCAAAGACTTTTGTTTCAGTTGTGCAGACAGATAACCGTAGTTGTGGGGAATATGACCGTTCTGAAGGTCACGGGAATACTAGCACTACAGGATTGGCAGGTTCATCAACCACGCAAAACAAAAAGGTATCTCCGGTGTGGTACGAATATGGCTGCGTCTGA

Transcript

c0715.g003.t2

Protein

c0715.g003.t2

MATVNEFLQSPLVTWAHTFSGNSRPETVADFADGVFLNEIMVEIDPTYFTLTRVQHNVYGDINSRVQNLDTLVRHLKGYYQERLQQVVLARVPDIVLVAHDPESEASMEELTKILLLMLGVAVQCENKEHFIGKIKELDFEVQRLLVDCIKQVTDNSDNVLPFRLSEIAEYPAEQLILMAEAMYYHIGQLVDERDASVGMITHLTYEKDSLLKEQELHPRSSLSPPLSPRHSFKKTSPALTATKEKLRLLMEEVEEKNIMIQELRDELLSGKRTIEKLRQDNKDLSQDARWVKAYRDEIDMLKSKADKVEKLEADTVKYKEKLRDLDYYKKRAEELKEQNELLYDTKVVLEEQLVGMSTKDEKLELSEEANKKLKSHIHELAEERQFDQIKLKEIMEENAQLVLDKQNSMAELVALMAELDVLRGKVSPGASSLASEYKEQSSVEILRLQKENQHLQKSIENLRNSSSKVEDLERKNKELKNMLKSDKQETHSLNEELAQVKARAKQQSSDIVKLNQKLEELQHEASSSSDLLSVEPQQANSYLVDSNRRQRCSSDDENIVRLKQQMKESEKKEKKLCQQLEDKNTKIAQLTETIEVREKKLKSLEARLEENEKEQHKTEKQVKGQTKEISELEQKIEELKSLKTKDQNKLKSKERELDELKSRLDDTLSHKNRCDENLRRKEKEVYDLKNRLDKLNDANDRLVEDGRIKEQKIGSLQRRTEELAGSLDEKLDYFNKGLREKEKEKKELERRIESLGDCTEEVKRLKELIKQKDAKLENLNVTVQEKTGRLHDLETSDKDNYLFNRFEDLDNGNKKLVHTLRLKEKKIESLEGSLTEVEMDMSNTYVKEGKIAEMKKSIEGKDNKLLELENRLEDLVSCNNKMQHSLKLKDEKLQDLEKQNQELEETTAEKTKLSQSLEQKLQRILNMETRIEDLTNENLQMRNNVEVKDGKLQSQETRIFELEESLKSFQLIEHDLRHKDDRITSLTRIIQEREEKLAELEHRFEDTQAHNHKLNRSVKIKDDKISVLENRLEEFEGLTAEKQKLSQLLKQREEKIIALDSKIVELEDVLVDNEKLSHSTKQKDEKIQRLQERLDEVEDAVKMNSRLNHFLKQRDEKIKSQDNRMKELESSIDCREEQHQKEKSHFENRIRILEKSLDEVNQAKVQRTNSVKRRDEKIVDLDKKRSALEQYIQEREGRIQDLQTKLDGSSDRFRKLDLSVGEKEMRIAELEAKLLEAQDDARENRKLNQIMKTKDARIDSLETKLQSVEGSLKKYKVELQEKNETLENVQQRLEETLNLNNKLDQSVRKKEENIRTLEKHLQAIEKREEELEELLETKAEKLSEYKKRVLDLEDVMEGKDDKISEQQKRLDEVLKLTNADQKYRVTTEEKDSRIMQLEKDIKELEVKSDLVKCSTVEVEYLNNVVKTQKEKVQELEAKLEECMNRNKKLDLGAKQKENTIETLEKRIELLLASQDTSDKSQSKALQRKDSTIATMSQSLQQQESEIMSLENRLEEAVARADKLNHTLDQKEERIKSLKSRLEDAVHQNNKLKHNLELKDDKIQGLERRLEDSVKEFDVLRGNLAVLDRKPEGEKDTRPKGSSSQTIIFKPANNANNMKAVELLADAERRLEELNEEVRALEKQNATVGAQNEAMCAKNASLVIENESLKNDLKNLKSDYSNLLLDVGEAREYYNQVDISSSKMVHRCEMLEQLNSTLEEENKALMDQVTKLVSQNQDMLIRSLDDKEQSMEDERLFSDRLFALQREKERLEVQVQLANKALAECTPIKKKKNVFKRGAHKMLKATGLKKKKDEPNKKGNVQLLKVDHSPFAEHFDAYRPVNADLESDSYSSISNVTPLRSRHDDSRSSFDSRESTASVDSYNLPNRSGLPVSHSEGHLRRARTNANMQAASPADVVQLRRGSQDVSAYHARHVRSEYYGDRDFSPVVKLHRPKSLDALNKIVDNDSTLLPELRARGNSDNASRLNTVQTVSSTLRKELQFVSSTPATPTGTRRSPPRQTSSPRVSTVPSPRASPKSSPTPKRKFYPSPPPSPTMSRSSVGSFNSDAVPVKERSTEIPTRDSCSKVPATIPSTVVRVGATFALASPSSSSITVSQVRDPHDVATTPVSSSMTATPGRESGRMKSSNASPGKLSGPRVTVDKVTHISETDTAPIEKYVREMERTKELNRGSFRGSNRSLSSNSLRGSNHSLNRVTASTSTLPARQGTTVYAVVSSTNNRKESIKSAESVVIDATGRDVSVAPADKSFSGPGQSDANPSAPVQPTVIKARSSGVRINADETSTLPPTSNLTNEIQTRKENSQHESNQNHVRTSSSRQRSTSGRSITSQSLAAQTRNTGDDKLGVQARVREFEKQNTEAHSIRSPSSSALAGVQTEDEHRSRSVNSDASPGFRKQPKTNSHKKKDEQSQSKTFVSVVQTDNRSCGEYDRSEGHGNTSTTGLAGSSTTQNKKVSPVWYEYGCV*

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P85120	Protein Daple OS=Xenopus laevis OX=8355 GN=ccdc88c PE=1 SV=1
A0A2R8QCI3	Protein Daple OS=Danio rerio OX=7955 GN=ccdc88c PE=2 SV=1
Q9P219	Protein Daple OS=Homo sapiens OX=9606 GN=CCDC88C PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002042 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19047 all species →	HOOK_N	HOOK domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043936 all species →	Domain	HOOK, N-terminal	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18947 all species →	HOOK PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0030705 all species →	Biological Process	cytoskeleton-dependent intracellular transport	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0051959 all species →	Molecular Function	dynein light intermediate chain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25392	CCDC88A; girdin	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.