Gene detail

Detailed information of c1352.g004.t1 in Palythoa umbrosa

Genomic Location: c1352:38716...62614
NR annotation: CAH3160453.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation PUMBR · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

c1352.g004.t1

ATGGGGACAGAGTACAGCGTCCACAATGACTACGAACTGGAAGAATCGATTCCATCGTCAGACAAGACCTGGGAGATGTTTTCAGGCCAAAAGAAACAAAGTAAAGCTAAAGTTACAGTATTTGTCCATGaaaagaacaagcaggagaaaaagaaaaagccaaaatcaagcaatcagaagTATTTAAAAGTTTTACGACACCCATCAGTTCTGAAATACCATGCATCTTATGAAGACTCGAATGAAATTTATTTGGTTACGGAACCAGTTGTACCTCTGGAGATGGTTCTTGAGGCATTGGATGTTAATGAGATAATTGCTGGATTGTTCAGCATCGTGCAAGCATTGGACTTCCTCCATGAAAAGTGCATCTTGTCCCACAATGATGTAGGCCTGTCTTCCATTTATGTTAGCACAATCGATTCATCATGGAAACTTGGCAGAATGCAACATGTTTGTAAATATTCTGAAGTGACTTCTCAGTTTCTTGAATCAACAAAAGAGACCAGGGATTCAAAATCAACCAGTCCTGAGGAGAAGGAAGGTAAAGTGCATCTGACAGCAGAAACTGGGCATTCCTTGGACTCATATGCATTTGGTATCTTGGTTGGGGATATTCTTGACTGCAGAACAGATCTTGGCAAAGATGGAGAAAAATTCggagaaaaaATGCAAAGTCTGTTTCTACACATTGACCCAAAAATGAGACCAAAATTTTGCAGCCTGTATGAGGACGAGTTCTTTAGCAATCCATTCCTGGCAGTTCTTACGTTTCTTAACAACATCACTGTCAAGAGTGACATTGAAAAAGAAAAGTTCTTCAGTACCCTTGTGTTGAAACTCAAGAGTTTTCCTCCTGAGTTAGTTGCCAAACGTCTTCTTCTAAGGCTGCTTTCGAGGTTTGTTTTGGCAGAACCTAGTGCCATTCGAGATTTCCTACCACATATCCTGACGCCATTATCAGACTCAAATGAAGTCAACAAAACGCTAAAGGGAATCAATCCAGTTTTACCGGAAAACATATTCAAGGAGAGCGGAGTGCCCATTCTATTGAAGCTGTTCTCAGTCAAAGACACCCACGTGCGATTGGTTCTTCTGGAGTTCTTTGATCTGTTTGTAAGGTCATTTGAACATGAAGATTTGAAAGATTTTATTCTTCCTCAGCTTCTTCTCGGATTGAGAGATACAGATGACGCCGTGGTGGCCGCAACACTTCAGGCTTTGTCCGTGTTGGTACCGGTGCTTGGTGGCGCAACTGTCGTGGGTGGTGAACGTGAGAAAATCTTCATTGAGGGAAGACCAAAGTTCAGTACCTCAACAACAATTTCTCAAGATGTGCCCATGAGGAATTTGAGTCACGATGAACCGTGGAAGTTGAATAACGTCTCTTCACGAAGGAGCCTGAGTCCAGAAACTGTTAGTGACGTCATCGACCTGGAAAAGAGGCTCAGCCCAACTAGTGAAAAGCCAGTGCCACTAAACAAGGAAAAAAAGCAAGTTGAAagagagcagagacgaaaggagatagaaaggaggagagaggaaaagaaaaaggaaCGTGAGTTGCAAAGATTGGAGAaagaaaaaagaaaacagaCTTTGGTTGTGAACAATGAAACACCGGAAATGACAGGCACTAACAATGAAGACAACACCTGGGAATCAGACGACTCCGACGCATGGGAAGATTTTGGAGGCAATGGAAGTTTGAACTTGAATCGTGATTCCAGCGAACACACACGTTTTGACGTTGCGGATCTTGATTTTACTCAAATTCACGGACATGATGCACAAAGTTTACTCCACGAGGAAACGAAGCATTTTAACGGTCAACATGGGTTGTTGACTGTAAAATCAGCTGAAGAAAACAAGATTGGAACGTGCGTTACAACGCTTCCTTCGTCAGATAAGCAAACAATTTCATGGGAGAACAAGTCGTTGGACAATCAAAATGATGTGTCAGAAACCTCACATCAGTTTGAGCCAAGGCACACTGGAAAAGCTTTGAAGCTAGGAACAAAAAAGGCAGCTAAAGTAGCTGACAAAACGTCTAAAAGAGATGCCGTTGGCCCTTCCTTGCTCGGAAGCGAGTTTGAGATTCCAGCAGTGTCACTAAAATCGAGTGCGCCGGACTTCTTTGCAGATATGGAACCGACCATTGACTTCAAGACTCACGACGCACCGGGGCACAGGAGAACTGGGTTCAATAACAAACTAGCAGTTGTTGATGAGACGTCACAGGTGGAAAGTGGCTGGGACGATGAATCGTGGGAGGATTTTAACTGA

Transcript

c1352.g004.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IZE3	Protein-associating with the carboxyl-terminal domain of ezrin OS=Homo sapiens OX=9606 GN=SCYL3 PE=1 SV=3
Q9DBQ7	Protein-associating with the carboxyl-terminal domain of ezrin OS=Mus musculus OX=10090 GN=Scyl3 PE=1 SV=3
Q561M0	N-terminal kinase-like protein OS=Xenopus laevis OX=8355 GN=scyl1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005805 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR021133 all species →	Repeat	HEAT, type 2	Interproscan
IPR051177 all species →	Family	Catalytically Inactive Kinase-Related Protein	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12984 all species →	SCY1-RELATED S/T PROTEIN KINASE-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17542	SCYL3; SCY1-like protein 3	-	Protein kinases	ko01001	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.