Gene detail

Detailed information of c1940.g001.t1 in Palythoa umbrosa

Genomic Location: c1940:47...13440
NR annotation: CAH3020772.1, unnamed protein product [Porites evermanni]
Species Palythoa umbrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

c1940.g001.t1

ATGGCGGACGGTGAAGTGAATTTTGACTCCCAAGAGTTTATCGGACCAATAACGAGTCTTTCATTCTGTGATGAAGTCATAATTTCAGGTGAAGGCCCCTATATTAGGATTTATGATTTGGTATCAGGTTTACTTCTTTGTCAAGAGAATGTCCTGCCCAGATGTAGAATACATACCATAAAAGTTGAAGCTAGAAAGAAAACATTAATTGCAGTTTGTGGTCAGAAAGCAATCAGAGTTCTAAAATTTTCTTCACACTCCACTTCATCAAGATCAGTTTTGCCAGTGACTGACATCACTTTCATCCCAGATTTAATATGGTGTGTCCAGTGGCTGTACAATGAGTCCGATGATCCTTATGccatTGCCATAGCAACAGCTCACAATGCTGTTTCACTTTGGCATTGGGAGAGTGGTATAAACAATTTTGTTGCCCAATGTGAGGAGCGAAGCATTTTATACTCAGCACGTTTCTTTGCCCAGTCTCTTAATGAACTAATTCTTGCTAGTGGAACAGTTTTCAACCAAATTCTTATTTGGAACATAACTGGACAGAAGAATGAATCAGGCAACACCATGATCAGTAATCGGTTAACAGGTCATGAAGGGGTGATATTTTCAATAGATTTTAACGAGGCTGGGAGCCTAATTGCCTCTGTGTCTGATGATAGAAGTATTCGTCTTTGGAAGGTGGCTGGTTCATTGAGAGAGACAGGCAGTGAAATCCAGCCATTAAAAGTGATGTTTGGACACACAGCAAGAGTATGGGACGTTAAATTGTTGAATAATTTTATTGTAAGTGTTGGCGAAGATGCAACTTGCTGCATCTGGGACTACGAAGGACAAATTAAAAAAAGGTTCAAAGGCCACAAAGGTCGAAGTATTTGGAGTCTTGCAATAAAtgatgatgaAGAAACAGTTGCAACCGGGGGAGGAGATGGTAGTGTTAGGATGTGGTCACTTAGAGACACAGCTAGTACACAACACTTCAGAGCTGTATCTGCACTTCCCTTGACATCTGTGAAAGAAGATTCACAGCAATTTGAGGAATTATCTGTGAAAGAGAAGGATGATTTTCCAAGAttggtcagtttgCTGAGTTTGCAAGAGATGCTGGTTATGACAAGGAAAGGGTGCTTGTATAAATACAGCTGTCAGAACAAAGGTTCACAAATCACAACTGAGCCTGTAGCTGAAAACAGAACTTCAgcagaaagcaccacagtcggaccacactgtGCGGAAAGCATCACAGTTGGACCACACTGGGATTTGTTGCTGAGAGACCCAAACTTTGCTTCCTATAGCGTAATGTCACTTTCCCCATGCAGGCGTTTAGTTGCCTTTGGGAACCTGCAGGGATGTGTGAAGATTTGCAGTGTTGACATGTCACAGCATGCTATACAAGTAAAGCCGTACTCAGGAAAATGTTTAAGCCTGGTGTGGACCTCAGTTGGTTCTGCTAACACTCTCATCTCCTgtgggccTGAGGGCCAGATGCATTGGTGGAGGGTGGCCCAAGGCTTGGAGGCCAAGGACCTTCACCTAGAGCCTTTGCGCATTTTTCGCCTTCCTTCATCCAAGCAGCGTTGGGTTACCTGTGCAGAAATGTTAGACCTATCACACGGAGACCAAGATATTGTCAAGGACAATCTTTTTGAAAGATATTTGCTTATTTGTGGTGATAGGAAAGGGTCATTACATGTCTACGATCCAAGGAAGAGCAGTGAAAAAAATGAGGTTATCGATCCCTCGCACTCATTACGCGGTGTTCATGGTCGAATTGGCGTGTCACACATCTGCGTTCGGGATGGCTGCGTGTTTACTGCAGGAAGAGACGGGTTTTACAGACAGTGTAAAGTCAATGAAAACGTAACACTGGAAGTTATCGATAAGAAGAAGgtGTACAAAGGCCTTGATTGGGTGGAAAAACTGATCTTTGCACCAAACGGTGATCTACTTATCGCTGGATTCCACACGGCATATTTTGTGCTTTGGAGTGTCGGTAGGAACGAGCTGTTACTAAAGGTCAAATGTGGTGGCGGTCACAGGGCTTGGGATTTCATTTTGATACAGAACTCGAATGTGACTCAAGCTGCGTTTACTTTTCTCAAAGGACAAAAATTATTCACAGAGAACGTGGAAATGCGTTCGCCGATTAGTTTTCCGATTCTCAAGCCGAGTTTCCACGGGAGAGAAGCAACCTGTGTCTGTCGGCTTGGACCTATGTGTAACAGTAGAGGAGACAACTTCGAAATTCTTGCAACGGGAAGCGAAGACACAGACATCAACCTGTTGTTGTACAATAATGCAAAGGGCAGCATCACAAGACTTTTTACAGCTCAAGGACACATCTCAAGTGTAGAGCTTTGTCTGCCTTGTTCGGGAACCCCGTCAACGTCATGTTCAAGATATCTCTTGTTCTCAGGAGGGGGGAGGGCCTCGCTAAAGTGCTGGCGAGTAGATCTTTCAGTCTTAGCCACTAATTCTCCCCCTGGTCATTGCTATGACAACAGTGTGACGTCATCTCCTATGGTGCTATTATCTGAATATTCAACGCGTGTGAGCAAATACAGGAGGAGGCGAAAACTTGAGAGTCAGATGCACTCAGAAATACGTTTTATGTCGCTTTCTGCTGTCAACCTGGCAATGTTTTTCGATGACATGTTTACTGAACCGAACAGGGATAGGATTCAAGCGTTATACTGCATCTGTGCGGCTTGTTCGGACGGTTTTGTAAGACTGTTTGGCTTTGATGAAATTCTCCAGCAATTTGTTATTCTCTCTCAGTCGGAATACCTCAAGAGATGTGTGTTGTCCGTACGTTGTGTGATTCATCGTGACCGCGGAAACAAACCTCACCTAATTCTCTTTGCCGGGGATACTGCTG

Transcript

c1940.g001.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99ME2	tRNA (34-2'-O)-methyltransferase regulator WDR6 OS=Mus musculus OX=10090 GN=Wdr6 PE=1 SV=1
Q5XFW6	tRNA (34-2'-O)-methyltransferase regulator WDR6 OS=Rattus norvegicus OX=10116 GN=Wdr6 PE=1 SV=2
A7Z052	tRNA (34-2'-O)-methyltransferase regulator WDR6 OS=Bos taurus OX=9913 GN=WDR6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004784 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR051973 all species →	Family	tRNA Anticodon Loop Methyltransferase Regulator	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14344 all species →	WD REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0030488 all species →	Biological Process	tRNA methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24737	WDR6; WD repeat-containing protein 6	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.