Gene detail

Detailed information of c1949.g001.t1 in Palythoa umbrosa

Genomic Location: c1949:2856...14311
NR annotation: XP_031571692.1, potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2-like [Actinia tenebrosa]
Species Palythoa umbrosa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

c1949.g001.t1

ATGCACAAGGATGAAATTCCAACAAGTGAAAATGGCAGGGTAAAGGAACATGTTGTGGTCATCGAAGAGCCTTTTGAGTTTTCAGGTAGCATTTCAAGGGACACTTCGTCGAAATATCTTCGACAGGCAATAAGTGGAAGGACGAAAAATGTACACAGATCTTGCGATGAAACTATCTTATGCGAGAatgatgataataataCCACAAATAGCCAAAGTAAAGATGACAAAGTTAGTACAGAAAGAAAGCGGGGAACTTCTGAACCAGCCAGTTACGAGCATTTTCGCCGTCGTAAAGATATATGTATGTCAAAGGATTTATTTTCTACAACTCAGGCTGGCATGAGTACGAACTTTCACCGCGATGCCGATTTCGCCTTGGGTACTCAATCAAAAGAAAAAGTAAGTCGCAAAATATCTACAAGTAGGAGTGCTCCACTATTAGGATTAATACATCAACCTATTACAAGTTCATTTAATTTTCGCCTTCGACACTGGATTCAACCTGCGGACACGAAAATAAACATAAAAGTTTTTGGTGGCAGAAAAGGGATGGAGGACGAACAGTTGCGTTTGAGGAAAGCAGGATTTGTTATACATCCTACCAGCCCGTTCAGGATGTTCTGGGACGTTGTGATGTTAACTATTTTGATAATCAACATGTTTCTACTTCCGGTTGCAATCTCGTTTTTTAGTGACGACATGAGTATCGAGTGGATAACATTTAACTGTATCACGGATGCAATATTTCTGACCGATATCGCCCTCAACTTTAGAACTGGGATTATGGTCCACGGACGGCAAAACAAGTTTATTCTCGAACCGAAACTTATTGCAATCAGATATTTAAAAACGTGGTTTGTCCTGGATTTAGTGTCCTCAATACCGTGGGATTATATTTCTGCCGCTGTAACAAGTTTTAGCTCCAGTTCCGCTCTGCTGGGGGCATCCAGGGCACTGCGTATACTGCGCATGGCAAAACTACTTAGCTTACTACGTCTTCTCCGCATAACACGTCTGTGCCGCTATATCAACCAATATGAAGAGATTCTCAATATCACCAAATCTGTCATAAAATTTGTGAACTTAGTAAGTTTGATGCTTTTAGTTGCGCATTGGAACGGCTGTCTGCAATTTCTTATTCCTTTTCTGTACGACTTTCCTGAAAAGTCATGGGTGATCATCAACAATTTAGAGAATGCCCCATTTGATGAACAGTATTGTTGGGCGTTATTCAAAGCATTATCGCACATGCTCTGTATCGGATATGGGCAGTATCCACCTAAAACCATTCCCGAAGCCTGTGTTACAATTTTTAGCATGATGACCGGGGCGACATTCTACGCTGTTTTCATCGCCTACTGTATTAATTACATACAACAACTAGACTCCGCCAGAAGGCAGTTTGTAGAAAAGAATCACCAATTAGATGAATACATGTCATATCGTAAATTACCCTTGAAGCTCCGTGAGAGGATTACAAAATACTACGATCATCGCTACCAGGGCAAGCTGTTTGATGAGGCAGTTATTCTGAATGAAATCTCCAGACCACTTAGAGAGGATGTCGTAAGACACAACTGTCAGGATTTAGTCAGCAAGGTGTCCTTCTTTGCTGAGGCCGACACAAATTTTGTGTCAGCGGTTGTAACGCGGTTAAAATTCGAGGTGTTTCTAGAAAACGATGTCATTATTCACGAGGGAGAACTGGGACTAGAGATGTATTTTCTAAAAGAGGGAACGGTACACGTCGTCCGTAAAGGGAAAATGACGACGATACTCAGCGATGGAGAATATTTCGGAGAGATTTGTTTATTAACAAATGCGCGACGGACTGCCTCCGTCGTTGCCAAGACAACATGTGACGTGTTCCTTCTAAGTGCGGAAGACTTCAGAGATGTACTCGAAGAGCATCCCAACATGAGGAGTTTGATAGAAGAGGAAGCCCAGAAAAGACTCACCTCAATGGACACGTCCGTTACCCTGGCAACAGCCCAGCACGATGAACATCAAGTGCAGTTTCAAACCTGCTCAGTGATGACGTCATCTTCAACATGCAGCTGTGGattaagtgaacacAAATTAAGCGAACACGTGATATCAAGAGAAGTGGTTGAACCAACCTCATCAGAACAGTAG

Transcript

c1949.g001.t1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88703	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Mus musculus OX=10090 GN=Hcn2 PE=1 SV=1
Q9JKA9	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Rattus norvegicus OX=10116 GN=Hcn2 PE=1 SV=4
Q9UL51	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 OS=Homo sapiens OX=9606 GN=HCN2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001631 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan
PF08412 all species →	Ion_trans_N	Ion transport protein N-terminal	Family	Interproscan
PF00027 all species →	cNMP_binding	Cyclic nucleotide-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR013621 all species →	Domain	Ion transport N-terminal	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR051413 all species →	Family	Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45689 all species →	I[[H]] CHANNEL, ISOFORM E	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0003254 all species →	Biological Process	regulation of membrane depolarization	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0035725 all species →	Biological Process	sodium ion transmembrane transport	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0098855 all species →	Cellular Component	HCN channel complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04955	HCN2; hyperpolarization activated cyclic nucleotide-gated potassium channel 2	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.