Genomic Location: c1951:22246...23008
NR annotation: NLF48258.1, 50S ribosomal protein L7/L12 [Acholeplasmataceae bacterium]
Species Palythoa umbrosa · all data for this species · gene families
| CDS |
| c1951.g004.t1 |
| Transcript |
| c1951.g004.t1 |
| Protein |
| c1951.g004.t1 |
| UniProt accession | Description |
|---|---|
| B3WA01 | Large ribosomal subunit protein bL12 OS=Lacticaseibacillus casei (strain BL23) OX=543734 GN=rplL PE=3 SV=1 |
| Q035V6 | Large ribosomal subunit protein bL12 OS=Lacticaseibacillus paracasei (strain ATCC 334 / BCRC 17002 / CCUG 31169 / CIP 107868 / KCTC 3260 / NRRL B-441) OX=321967 GN=rplL PE=3 SV=1 |
| A5EX71 | Large ribosomal subunit protein bL12 OS=Dichelobacter nodosus (strain VCS1703A) OX=246195 GN=rplL PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006862 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00542 all species → | Ribosomal_L12 | Ribosomal protein L7/L12 C-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000206 all species → | Family | Large ribosomal subunit protein bL12 | Interproscan |
| IPR014719 all species → | Homologous_superfamily | Ribosomal protein bL12, C-terminal/adaptor protein ClpS-like | Interproscan |
| IPR013823 all species → | Domain | Large ribosomal subunit protein bL12, C-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45987 all species → | 39S RIBOSOMAL PROTEIN L12 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003729 all species → | Molecular Function | mRNA binding | Interproscan |
| GO:0003735 all species → | Molecular Function | structural constituent of ribosome | Interproscan |
| GO:0005840 all species → | Cellular Component | ribosome | Interproscan |
| GO:0006412 all species → | Biological Process | translation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02935 | RP-L7, MRPL12, rplL; large subunit ribosomal protein L7/L12 | - | Ribosome | ko03011 | deepkoala |
Genes whose expression across the transcriptome samples of Palythoa umbrosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Palythoa umbrosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
