Gene detail

Detailed information of evm.model.Ap1.1109 in Astrangia poculata

Genomic Location: Ap1:10929473...10944514
NR annotation: XP_020621125.1, ubiquitin-associated protein 1-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.1109

atggcgtcttttcaaaagacatttcggaaaagcggcagtcatcatgctgaatttcattctctacaaggagttgaagtaaaaattggagagaaattcagaccgccgaaaaaggtgacattacctgttggatggcagcaaaaagatccttcagttgccctgagcttaacatatgacttcagccttgaaagagatgttatttctaaagctgatgcactcagggcttcaaaactggaacaatcagaagcttccccagttgaacctcaagttgcaagttcttctgcagaaccacttgctaatcaaaattcaatattttcaaatgttggaagtgaaattcttcaaccagtggttgcacctggaacagggcataagaaaaaagacagctttggtggaaaggggaaaaatgcatttgacttagcagactttgagggtgacacgtcaacaccatttgaacttgtggaattacaaacaattaatgatttggatgaactcaagaatgtccttcaacctaacagtgtaccagctaggactatggaaaattcaactacctcatatgaatatgcagcacatggtgctcctagtggttcaactggaagtgttgttagtccaaacacgagcaatgtttctcaatcagggaattcattaattgatatttcaagtcctgcaaatgtgttagaaaaaccttcatctcctatcagtaaacttccagatacaagaactccaactaatgccagtacagaaggtgcgttgctagtggatattggagaatcaaggactaccccattaactcctcctgcaactgttacagcaagaaatgattctgttgcaagtaattctttgcctaatacaaggcctcatccagaggacaggccaatttcgaagggaggattattgcctcccattgggtgtagttttccttcgtcagtgtctcaacaaccacaaggacaacagcctttggaaatctcaacacattctagtgagagtagaaattcttaccagggtgggatttatagttttcctaaaactcttcctctacaaggacaagagcaaaccacaacaccccaagaaattaaaacacaatatggacattacagtactcctccctatgttccgagttcaagagaaccacagtggaatgctccaaggtcccctgaatttcagaatacagggggtcgcttttcttcacctttgccaccaattggagcatcgtcaatggaaaggcaaaccaaccatttaacagacgtagatcgcacgtatagatcctctctgccagatccatggcctgtcttagatgagtcagaacaatcctttgttcgcaacatagcgagcatgggcttccctaccccacgtgtaagtagggctgtacagagacttggcatgaaggacggtgaggttatggaattcctacttgctacacaggagttaagtgaaatgaactacccagcagacactgtagaagttgcccttgtttacactgacacagagaaagctaagactttaaagttatgggatgtacaggagcctaatggctggacaggacttagatcaaggctctgggcatgcctgtcaggttataacctgatcctcaaaaaccgcacagttggtatccacggcggcgttgggctttacattaacaacagtatcaagttcaaggccctgactgacctgtatcatcctaatttggaggtgttatgggctcatctcaggccttctcgcctgcctcgggaatacccttgcattgtgtttggaactgtgtaccacactcttcacccagaaggtgcctgcgacaatacaatgctggagtatctgacgacctcacttacgaccatcgaggggctgtatcccggatgtggtattgttttgactggagacttcaaccgcttgaatatcagccgcctgttgacgcagttcaaactgaagcagcttgtttgcgcagccactcgcggcgaacgcactcttgatcttattttaacaaatatgtcacaagtgtacgataagaatctagtacagatctttccaccctttggcctgtctgaccactctgttgtcttcctgcaacctaagccacgcccctcgcgtaactcaagtcggcgtgttgtaactcgaagggacacccgaggcagtcgaagagctgaacttggcaggaacttaagttcagtggactggtctgtgctcgacactctggctagatgtgaggacaagcttcgcgtatttcttgactttctgaggaccggcatggatatcattcgtaagatcggtcaagcttcggaaaacggcccctggaaacagctcaattcaaggatccattttaaaaccccacaaagcttttgttgcggagacactgaaaccgccggttttcgtaacccttttcaatcgcgaaaggaggctatgcggaaaaaaatacttcaaccggggacattttaa

Transcript

evm.model.Ap1.1109

ATGGCGTCTTTTCAAAAGACATTTCGGAAAAGCGGCAGTCATCATGCTGAATTTCATTCTCTACAAGGAGTTGAAGTAAAAATTGGAGAGAAATTCAGACCGCCGAAAAAGGTGACATTACCTGTTGGATGGCAGCAAAAAGATCCTTCAGTTGCCCTGAGCTTAACATATGACTTCAGCCTTGAAAGAGATGTTATTTCTAAAGCTGATGCACTCAGGGCTTCAAAACTGGAACAATCAGAAGCTTCCCCAGTTGAACCTCAAGTTGCAAGTTCTTCTGCAGAACCACTTGCTAATCAAAATTCAATATTTTCAAATGTTGGAAGTGAAATTCTTCAACCAGTGGTTGCACCTGGAACAGGGCATAAGAAAAAAGACAGCTTTGGTGGAAAGGGGAAAAATGCATTTGACTTAGCAGACTTTGAGGGTGACACGTCAACACCATTTGAACTTGTGGAATTACAAACAATTAATGATTTGGATGAACTCAAGAATGTCCTTCAACCTAACAGTGTACCAGCTAGGACTATGGAAAATTCAACTACCTCATATGAATATGCAGCACATGGTGCTCCTAGTGGTTCAACTGGAAGTGTTGTTAGTCCAAACACGAGCAATGTTTCTCAATCAGGGAATTCATTAATTGATATTTCAAGTCCTGCAAATGTGTTAGAAAAACCTTCATCTCCTATCAGTAAACTTCCAGATACAAGAACTCCAACTAATGCCAGTACAGAAGGTGCGTTGCTAGTGGATATTGGAGAATCAAGGACTACCCCATTAACTCCTCCTGCAACTGTTACAGCAAGAAATGATTCTGTTGCAAGTAATTCTTTGCCTAATACAAGGCCTCATCCAGAGGACAGGCCAATTTCGAAGGGAGGATTATTGCCTCCCATTGGGTGTAGTTTTCCTTCGTCAGTGTCTCAACAACCACAAGGACAACAGCCTTTGGAAATCTCAACACATTCTAGTGAGAGTAGAAATTCTTACCAGGGTGGGATTTATAGTTTTCCTAAAACTCTTCCTCTACAAGGACAAGAGCAAACCACAACACCCCAAGAAATTAAAACACAATATGGACATTACAGTACTCCTCCCTATGTTCCGAGTTCAAGAGAACCACAGTGGAATGCTCCAAGGTCCCCTGAATTTCAGAATACAGGGGGTCGCTTTTCTTCACCTTTGCCACCAATTGGAGCATCGTCAATGGAAAGGCAAACCAACCATTTAACAGACGTAGATCGCACGTATAGATCCTCTCTGCCAGATCCATGGCCTGTCTTAGATGAGTCAGAACAATCCTTTGTTCGCAACATAGCGAGCATGGGCTTCCCTACCCCACGTGTAAGTAGGGCTGTACAGAGACTTGGCATGAAGGACGGTGAGGTTATGGAATTCCTACTTGCTACACAGGAGTTAAGTGAAATGAACTACCCAGCAGACACTGTAGAAGTTGCCCTTGTTTACACTGACACAGAGAAAGCTAAGACTTTAAAGTTATGGGATGTACAGGAGCCTAATGGCTGGACAGGACTTAGATCAAGGCTCTGGGCATGCCTGTCAGGTTATAACCTGATCCTCAAAAACCGCACAGTTGGTATCCACGGCGGCGTTGGGCTTTACATTAACAACAGTATCAAGTTCAAGGCCCTGACTGACCTGTATCATCCTAATTTGGAGGTGTTATGGGCTCATCTCAGGCCTTCTCGCCTGCCTCGGGAATACCCTTGCATTGTGTTTGGAACTGTGTACCACACTCTTCACCCAGAAGGTGCCTGCGACAATACAATGCTGGAGTATCTGACGACCTCACTTACGACCATCGAGGGGCTGTATCCCGGATGTGGTATTGTTTTGACTGGAGACTTCAACCGCTTGAATATCAGCCGCCTGTTGACGCAGTTCAAACTGAAGCAGCTTGTTTGCGCAGCCACTCGCGGCGAACGCACTCTTGATCTTATTTTAACAAATATGTCACAAGTGTACGATAAGAATCTAGTACAGATCTTTCCACCCTTTGGCCTGTCTGACCACTCTGTTGTCTTCCTGCAACCTAAGCCACGCCCCTCGCGTAACTCAAGTCGGCGTGTTGTAACTCGAAGGGACACCCGAGGCAGTCGAAGAGCTGAACTTGGCAGGAACTTAAGTTCAGTGGACTGGTCTGTGCTCGACACTCTGGCTAGATGTGAGGACAAGCTTCGCGTATTTCTTGACTTTCTGAGGACCGGCATGGATATCATTCGTAAGATCGGTCAAGCTTCGGAAAACGGCCCCTGGAAACAGCTCAATTCAAGGATCCATTTTAAAACCCCACAAAGCTTTTGTTGCGGAGACACTGAAACCGCCGGTTTTCGTAACCCTTTTCAATCGCGAAAGGAGGCTATGCGGAAAAAAATACTTCAACCGGGGACATTTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5XIS7	Ubiquitin-associated protein 1 OS=Rattus norvegicus OX=10116 GN=Ubap1 PE=2 SV=1
Q9NZ09	Ubiquitin-associated protein 1 OS=Homo sapiens OX=9606 GN=UBAP1 PE=1 SV=1
Q8BH48	Ubiquitin-associated protein 1 OS=Mus musculus OX=10090 GN=Ubap1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006259 (this species only)

Pfam domain

No Pfam domain signature was detected for evm.model.Ap1.1109. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR042575 all species →	Homologous_superfamily	Ubiquitin-associated protein 1, C-terminal	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR023340 all species →	Domain	UMA domain	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR038870 all species →	Family	Ubiquitin-associated protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15960 all species →	LD44032P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000813 all species →	Cellular Component	ESCRT I complex	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0043162 all species →	Biological Process	ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.1109.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.