Gene detail

Detailed information of evm.model.Ap1.1111 in Astrangia poculata

Genomic Location: Ap1:10978548...10985754
NR annotation: XP_020621128.1, uncharacterized protein LOC110058809 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.1111

atgcagcaaagcaaacaggaaattatgtttgcacagctcatgctgtggaattgcgtcaaagatccctgtctgcgtccaggtgggtctgctcttgtaacatcagccctgtggcttgtgctcacatcttgtgaaactggatttttccgctgttctacctctggcgagtgccttcccgtgagattcaaatgcgacggacacgaagattgcgaggacagcagtgacgaactgaattgcacgaagcagcagacatgtcctctaggagaattttggtgcggtgactggaagtgtattttaagaagaaaagtttgcgatggtacacgagactgctcaaatggacaagacgaaaacgattgtggaatgcaaggcatattcgaaaacgttgggaacaaaaaaacaaagcgatttccagtttacaaaactgtgaaaggcttcgacatctacctgaggttcaccgccaagaagtgcacaggacaactggtcgagatcacgagcagggttaccaaccagttcttgcgaattacgctcctcgaaatagggcccattagactgtcatacaaaactgcaatcggtaagggccaattggatctcgccatgccatacaagtcgggattctgcgacggaaagaggcatcttttgaccctcagcctattccgtggtgtcgtgtcgtatggtgtcgacagagcagccccaaaacgattctacgtgtcgcgtttaggagcgccattttcatccccatctaatattgtcgtaggcagaggattggaaggatgtattacgggttccacggtggtgaatcgttttaacgggacacaagaatatgctgtaggaatatcgtctgattgcactgtgcaaaaaaccactactccacctcccaaacaaagattatttacctacagtgcaagaaaattagcaatctcaacgacatcatccagtccgaagtgtgagccactaaccctcacagcctgtaaagggctcggttacaacttcacccaagttccaaatcctcttcaacaccagacgtaccaccaggccgcgactgaattatccacttttctatccaagcttcagtcccagtgctcccctcatctcattccattcctttgccgactgtatcttcctccatgtagtctgccccagtccgcccctcctccgtgcaggtcgctgtgtgagagtgtacaagaagactgtgtactactcagcccatcggagcgatggcctgggcacctgaactgcgagcagttcccacgagcaaatgagaaggagaagtgctttctgggatcaactaaggtaacgtccaagaggacaacgttgattagaggaacatctgaacagaaagacgacctgacagagactaatacactgaaaacggcaacaacgagcaaccaagttcatccaacaaagccagtggaaattgcagagacagcaaaaaatggaaaaacaggcgaccatacaaccgcaaacccagaaaaagaaataaaaccacgagtacctacaactactgcaagaaaatcagaatcgagaccaatgactgacaaactttcctctgttatgactggaaaagcaccatttacgggaaaagaaatgtcaggccacacaagacagaggaaagtctcggcgtcaactaaagctccactttttactaagaagataaaaaacgaaagaaataaaacaggtaacggcacggacgcaaattcacgatggaatgtttcttcatcatcaccagcatcgtctaaaaataaaggaggaagctgtggaggtgtgttagtgtctcccaagggccaactgatgtcaccaggttacccagcaggttatccgtcaaacacaacgtgcagatgggtgatcgccttaccaagtgaataccgtgcaattagttttacctttcaccgagtgtacctggaggaggaccgaaactgcgtgtatgactacattgctgtgtacgacctgttggacaatcaagtgggtcagcggtattgtggctctatcacgtcccccgtcatgaaagatgtcaaaggcaatgtggccgtggtggttttccgttcagattctgcgaacagcaaaaagggattcatcctctcctatgaaggtcgcaaatgtctcacgtcatccgaagtggataactga

Transcript

evm.model.Ap1.1111

ATGCAGCAAAGCAAACAGGAAATTATGTTTGCACAGCTCATGCTGTGGAATTGCGTCAAAGATCCCTGTCTGCGTCCAGGTGGGTCTGCTCTTGTAACATCAGCCCTGTGGCTTGTGCTCACATCTTGTGAAACTGGATTTTTCCGCTGTTCTACCTCTGGCGAGTGCCTTCCCGTGAGATTCAAATGCGACGGACACGAAGATTGCGAGGACAGCAGTGACGAACTGAATTGCACGAAGCAGCAGACATGTCCTCTAGGAGAATTTTGGTGCGGTGACTGGAAGTGTATTTTAAGAAGAAAAGTTTGCGATGGTACACGAGACTGCTCAAATGGACAAGACGAAAACGATTGTGGAATGCAAGGCATATTCGAAAACGTTGGGAACAAAAAAACAAAGCGATTTCCAGTTTACAAAACTGTGAAAGGCTTCGACATCTACCTGAGGTTCACCGCCAAGAAGTGCACAGGACAACTGGTCGAGATCACGAGCAGGGTTACCAACCAGTTCTTGCGAATTACGCTCCTCGAAATAGGGCCCATTAGACTGTCATACAAAACTGCAATCGGTAAGGGCCAATTGGATCTCGCCATGCCATACAAGTCGGGATTCTGCGACGGAAAGAGGCATCTTTTGACCCTCAGCCTATTCCGTGGTGTCGTGTCGTATGGTGTCGACAGAGCAGCCCCAAAACGATTCTACGTGTCGCGTTTAGGAGCGCCATTTTCATCCCCATCTAATATTGTCGTAGGCAGAGGATTGGAAGGATGTATTACGGGTTCCACGGTGGTGAATCGTTTTAACGGGACACAAGAATATGCTGTAGGAATATCGTCTGATTGCACTGTGCAAAAAACCACTACTCCACCTCCCAAACAAAGATTATTTACCTACAGTGCAAGAAAATTAGCAATCTCAACGACATCATCCAGTCCGAAGTGTGAGCCACTAACCCTCACAGCCTGTAAAGGGCTCGGTTACAACTTCACCCAAGTTCCAAATCCTCTTCAACACCAGACGTACCACCAGGCCGCGACTGAATTATCCACTTTTCTATCCAAGCTTCAGTCCCAGTGCTCCCCTCATCTCATTCCATTCCTTTGCCGACTGTATCTTCCTCCATGTAGTCTGCCCCAGTCCGCCCCTCCTCCGTGCAGGTCGCTGTGTGAGAGTGTACAAGAAGACTGTGTACTACTCAGCCCATCGGAGCGATGGCCTGGGCACCTGAACTGCGAGCAGTTCCCACGAGCAAATGAGAAGGAGAAGTGCTTTCTGGGATCAACTAAGGTAACGTCCAAGAGGACAACGTTGATTAGAGGAACATCTGAACAGAAAGACGACCTGACAGAGACTAATACACTGAAAACGGCAACAACGAGCAACCAAGTTCATCCAACAAAGCCAGTGGAAATTGCAGAGACAGCAAAAAATGGAAAAACAGGCGACCATACAACCGCAAACCCAGAAAAAGAAATAAAACCACGAGTACCTACAACTACTGCAAGAAAATCAGAATCGAGACCAATGACTGACAAACTTTCCTCTGTTATGACTGGAAAAGCACCATTTACGGGAAAAGAAATGTCAGGCCACACAAGACAGAGGAAAGTCTCGGCGTCAACTAAAGCTCCACTTTTTACTAAGAAGATAAAAAACGAAAGAAATAAAACAGGTAACGGCACGGACGCAAATTCACGATGGAATGTTTCTTCATCATCACCAGCATCGTCTAAAAATAAAGGAGGAAGCTGTGGAGGTGTGTTAGTGTCTCCCAAGGGCCAACTGATGTCACCAGGTTACCCAGCAGGTTATCCGTCAAACACAACGTGCAGATGGGTGATCGCCTTACCAAGTGAATACCGTGCAATTAGTTTTACCTTTCACCGAGTGTACCTGGAGGAGGACCGAAACTGCGTGTATGACTACATTGCTGTGTACGACCTGTTGGACAATCAAGTGGGTCAGCGGTATTGTGGCTCTATCACGTCCCCCGTCATGAAAGATGTCAAAGGCAATGTGGCCGTGGTGGTTTTCCGTTCAGATTCTGCGAACAGCAAAAAGGGATTCATCCTCTCCTATGAAGGTCGCAAATGTCTCACGTCATCCGAAGTGGATAACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q498S8	Frizzled-8 OS=Rattus norvegicus OX=10116 GN=Fzd8 PE=2 SV=1
Q61091	Frizzled-8 OS=Mus musculus OX=10090 GN=Fzd8 PE=1 SV=2
Q9H461	Frizzled-8 OS=Homo sapiens OX=9606 GN=FZD8 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002674 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00431 all species →	CUB	CUB domain	Domain	Interproscan
PF00057 all species →	Ldl_recept_a	Low-density lipoprotein receptor domain class A	Repeat	Interproscan
PF01392 all species →	Fz	Fz domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR002172 all species →	Repeat	Low-density lipoprotein (LDL) receptor class A repeat	Interproscan
IPR036055 all species →	Homologous_superfamily	LDL receptor-like superfamily	Interproscan
IPR023415 all species →	Conserved_site	Low-density lipoprotein (LDL) receptor class A, conserved site	Interproscan
IPR036790 all species →	Homologous_superfamily	Frizzled cysteine-rich domain superfamily	Interproscan
IPR015526 all species →	Family	Frizzled/secreted frizzled-related protein	Interproscan
IPR001791 all species →	Domain	Laminin G domain	Interproscan
IPR020067 all species →	Domain	Frizzled domain	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11309 all species →	FRIZZLED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0017147 all species →	Molecular Function	Wnt-protein binding	Interproscan
GO:0035567 all species →	Biological Process	non-canonical Wnt signaling pathway	Interproscan
GO:0042813 all species →	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070 all species →	Biological Process	canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.1111.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.