Detailed information of evm.model.Ap1.1117 in Astrangia poculata

Genomic Location: Ap1:11072722...11078465
NR annotation: KAJ7365739.1, hypothetical protein OS493_002455 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B2RZC4Protein Mis18-alpha OS=Rattus norvegicus OX=10116 GN=Mis18a PE=2 SV=1
Q68UT5Protein Mis18-alpha OS=Pan troglodytes OX=9598 GN=MIS18A PE=3 SV=1
Q9NYP9Protein Mis18-alpha OS=Homo sapiens OX=9606 GN=MIS18A PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0009330 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03226
all species →		Yippee-Mis18Yippee zinc-binding/DNA-binding /Mis18, centromere assemblyDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR034752
all species →		DomainMis18 domainInterproscan
IPR004910
all species →		DomainYippee/Mis18/CereblonInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16431
all species →		NEUROGENIC PROTEIN MASTERMINDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000775
all species →		Cellular Componentchromosome, centromeric regionInterproscan
GO:0000785
all species →		Cellular ComponentchromatinInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0007059
all species →		Biological Processchromosome segregationInterproscan
GO:0034080
all species →		Biological ProcessCENP-A containing chromatin assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K11564MIS18, FASP1; kinetochore protein Mis18-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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