Detailed information of evm.model.Ap1.1123 in Astrangia poculata

Genomic Location: Ap1:11136073...11151325
NR annotation: XP_020621125.1, ubiquitin-associated protein 1-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006259 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF21267
all species →		UBAP-1_UBA2Ubiquitin-associated protein 1, UBA2 domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR015940
all species →		DomainUbiquitin-associated domainInterproscan
IPR042575
all species →		Homologous_superfamilyUbiquitin-associated protein 1, C-terminalInterproscan
IPR038870
all species →		FamilyUbiquitin-associated protein 1Interproscan
IPR049467
all species →		DomainUbiquitin-associated protein 1-like, UBA2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR15960
all species →		LD44032PInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000813
all species →		Cellular ComponentESCRT I complexInterproscan
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan
GO:0043162
all species →		Biological Processubiquitin-dependent protein catabolic process via the multivesicular body sorting pathwayInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K24629UBAP1; ubiquitin-associated protein 1-Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP