Detailed information of evm.model.Ap1.1142 in Astrangia poculata

Genomic Location: Ap1:11302302...11347577
NR annotation: XP_022783731.1, LOW QUALITY PROTEIN: laminin-like protein epi-1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P02469Laminin subunit beta-1 OS=Mus musculus OX=10090 GN=Lamb1 PE=1 SV=3
A4D0S4Laminin subunit beta-4 OS=Homo sapiens OX=9606 GN=LAMB4 PE=1 SV=1
P07942Laminin subunit beta-1 OS=Homo sapiens OX=9606 GN=LAMB1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001117 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00055
all species →
Laminin_NLaminin N-terminal (Domain VI)DomainInterproscan
PF02210
all species →
Laminin_G_2Laminin G domainDomainInterproscan
PF00053
all species →
Laminin_EGFLaminin EGF domainDomainInterproscan
PF00052
all species →
Laminin_BLaminin B (Domain IV)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000034
all species →
DomainLaminin IVInterproscan
IPR002049
all species →
DomainLaminin-type EGF domainInterproscan
IPR001791
all species →
DomainLaminin G domainInterproscan
IPR013320
all species →
Homologous_superfamilyConcanavalin A-like lectin/glucanase domain superfamilyInterproscan
IPR008211
all species →
DomainLaminin, N-terminalInterproscan
IPR008979
all species →
Homologous_superfamilyGalactose-binding-like domain superfamilyInterproscan
IPR050440
all species →
FamilyLaminin/Netrin Extracellular MatrixInterproscan
IPR000742
all species →
DomainEGF-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10574
all species →
NETRIN/LAMININ-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0009887
all species →
Biological Processanimal organ morphogenesisInterproscan
GO:0009888
all species →
Biological Processtissue developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.1142.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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