Gene detail

Detailed information of evm.model.Ap1.1160 in Astrangia poculata

Genomic Location: Ap1:11548949...11558389
NR annotation: XP_020625944.1, neuroendocrine convertase 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.1160

atgtttcgagttgtacggtctttgggcctcgccaagataataatatgtgtcttcattactgcgtggcccaaacagacgaacgtccttgcccaacggctcgctaacagcggagaaaaagtctacaccaacggatgggcaatacgggtgaagggtggcatcgagtccgccaaacgaatagccagatctcatggatttgaaaaagttgaaccgatcggtaccttggagggtttctatcacttagagcatgcagaagagccgcaccgctcaagacgaagtgcggaggaacgaacgggaagactcaagcaggatcctaaagtgatatgggcggaacaacaacacgaaaaaatccgcgtcaaacgaggccactttcacgatcgaatgattgcgagagggatcgtgcctcgcttctcggacccactgtgggacgctcaatggtatctggacgataagcgagcggatcaagacttagatgtgcacgttctaccggtctggaatcaagggatcactggaaagggtgttgttgttacaatcctggatgatggcattgagcataaccacacggatctcatcagaaactacgatcctcaagccagttgggacgtcaatggtgaggatggcgacccatttccgcgttatgatcccacaaatgaaaacaaacacggtacccgctgtgcaggagaggttgcggctcaagcaaacaataccatctgcggtgtgggcgtggcttacaacgcaaagattggaggggtgcgcatgcttgacggccgagtgactgacaaagtggaagctgcctcgttgagtcttaatccccagtttatcgacatctactctgcaagctgggggcctagtgacgacggcgctactgtggagggacctgggactttagcagctgctgcgttcgaaaatggaatcacaaagggtcgcggtggactgggttctattttcgtctgggcgtcaggcaatggcgggcggcatgaggatagctgtaactgtgatggatacacagacagtatatacacactgtcgatcagctctgcatcagatcacggcgagtcaccatggtactctgagagttgctcctccactctggccactacattcagtagcggagcgcacggagagaaaagaattgtcactactgatttacataacgaatgcactgaaagacatacgggaacttcagcgtctgccccactggctgcagggattatagctcttgcactggaggtcaaccctcgactaacgtggcgtgacatccagcatattgtagtgtggacatcaaactgggaaccacttaaacacgatcaggactggagtcctaacggtgtgggcctacatgttaatagaaagtttgggttcggcctgttagttgcggaaaagataattgaattagccaaacctactacgtttaaaactgttcctgaaaagaccatttgccggggacaaatcaatcaggatcgcaagcccatcaaatttaacgagcctttgaagataacaatgcactctaatggatgctcgggaactgcggctgagattcgttaccttgaacacgtacagatactgctaagtttggattacacacggcgtggggaccttgtcgtgtacctgacgtctcctatgggaaccaaatcctgcctgctgtccccaagaaaagaggacctctctgatgagggcttcacaaagtggcccttcatgactacgcactcgtggggcgaggatcctaggggtacatggactatagagataaaggaccttggtgataacagacccaatcacggcttactaaccgaatggcagcttattttacacggaaccaaacaaaaacccaaccatcaaccaattgaacatcccgacaagccacgtgactcggttccagtgcccgattcaacggcgcctcctcagtttcatcaagtgcccagtggaccgacttacacgtttgcttctcctccttctcctgctcctcctgctcctcctcctcctccccctccatctacagcgcctgttaaatacatatcacctcaagtggtaacctacaccacctcttcagctccgaacccggccgtcttgacccttgcagctcaatcaatagtgccattacatgaagcccaaaaacaacccagcaatgcatttatgtcgaacaataaacagactggtcaaacgcaaagcaactttggcgaacagcaaactaatttagcacagataaaccctcaggaggctatctactcccctttacaatccgtgcacaataactttgttcctgctgactaccatcaaactcaaattgctaattattaccattatgtggcgcctggaaatcctcgtggatatattcctcaagtgaaccctgctgtgccacaaactaacgaccagctgggatatcaacaaataaccaactggagaccagccactgcgtatcgtaatcctttacaatacaatacttacagtaattacctgcgaacattaggaagacggggagcgggaaggtcttatgtagaataccttaaaaccaagaagaataagttaaaaaagggtagttaa

Transcript

evm.model.Ap1.1160

AGCGATGCGATGTTTCGAGTTGTACGGTCTTTGGGCCTCGCCAAGATAATAATATGTGTCTTCATTACTGCGTGGCCCAAACAGACGAACGTCCTTGCCCAACGGCTCGCTAACAGCGGAGAAAAAGTCTACACCAACGGATGGGCAATACGGGTGAAGGGTGGCATCGAGTCCGCCAAACGAATAGCCAGATCTCATGGATTTGAAAAAGTTGAACCGATCGGTACCTTGGAGGGTTTCTATCACTTAGAGCATGCAGAAGAGCCGCACCGCTCAAGACGAAGTGCGGAGGAACGAACGGGAAGACTCAAGCAGGATCCTAAAGTGATATGGGCGGAACAACAACACGAAAAAATCCGCGTCAAACGAGGCCACTTTCACGATCGAATGATTGCGAGAGGGATCGTGCCTCGCTTCTCGGACCCACTGTGGGACGCTCAATGGTATCTGGACGATAAGCGAGCGGATCAAGACTTAGATGTGCACGTTCTACCGGTCTGGAATCAAGGGATCACTGGAAAGGGTGTTGTTGTTACAATCCTGGATGATGGCATTGAGCATAACCACACGGATCTCATCAGAAACTACGATCCTCAAGCCAGTTGGGACGTCAATGGTGAGGATGGCGACCCATTTCCGCGTTATGATCCCACAAATGAAAACAAACACGGTACCCGCTGTGCAGGAGAGGTTGCGGCTCAAGCAAACAATACCATCTGCGGTGTGGGCGTGGCTTACAACGCAAAGATTGGAGGGGTGCGCATGCTTGACGGCCGAGTGACTGACAAAGTGGAAGCTGCCTCGTTGAGTCTTAATCCCCAGTTTATCGACATCTACTCTGCAAGCTGGGGGCCTAGTGACGACGGCGCTACTGTGGAGGGACCTGGGACTTTAGCAGCTGCTGCGTTCGAAAATGGAATCACAAAGGGTCGCGGTGGACTGGGTTCTATTTTCGTCTGGGCGTCAGGCAATGGCGGGCGGCATGAGGATAGCTGTAACTGTGATGGATACACAGACAGTATATACACACTGTCGATCAGCTCTGCATCAGATCACGGCGAGTCACCATGGTACTCTGAGAGTTGCTCCTCCACTCTGGCCACTACATTCAGTAGCGGAGCGCACGGAGAGAAAAGAATTGTCACTACTGATTTACATAACGAATGCACTGAAAGACATACGGGAACTTCAGCGTCTGCCCCACTGGCTGCAGGGATTATAGCTCTTGCACTGGAGGTCAACCCTCGACTAACGTGGCGTGACATCCAGCATATTGTAGTGTGGACATCAAACTGGGAACCACTTAAACACGATCAGGACTGGAGTCCTAACGGTGTGGGCCTACATGTTAATAGAAAGTTTGGGTTCGGCCTGTTAGTTGCGGAAAAGATAATTGAATTAGCCAAACCTACTACGTTTAAAACTGTTCCTGAAAAGACCATTTGCCGGGGACAAATCAATCAGGATCGCAAGCCCATCAAATTTAACGAGCCTTTGAAGATAACAATGCACTCTAATGGATGCTCGGGAACTGCGGCTGAGATTCGTTACCTTGAACACGTACAGATACTGCTAAGTTTGGATTACACACGGCGTGGGGACCTTGTCGTGTACCTGACGTCTCCTATGGGAACCAAATCCTGCCTGCTGTCCCCAAGAAAAGAGGACCTCTCTGATGAGGGCTTCACAAAGTGGCCCTTCATGACTACGCACTCGTGGGGCGAGGATCCTAGGGGTACATGGACTATAGAGATAAAGGACCTTGGTGATAACAGACCCAATCACGGCTTACTAACCGAATGGCAGCTTATTTTACACGGAACCAAACAAAAACCCAACCATCAACCAATTGAACATCCCGACAAGCCACGTGACTCGGTTCCAGTGCCCGATTCAACGGCGCCTCCTCAGTTTCATCAAGTGCCCAGTGGACCGACTTACACGTTTGCTTCTCCTCCTTCTCCTGCTCCTCCTGCTCCTCCTCCTCCTCCCCCTCCATCTACAGCGCCTGTTAAATACATATCACCTCAAGTGGTAACCTACACCACCTCTTCAGCTCCGAACCCGGCCGTCTTGACCCTTGCAGCTCAATCAATAGTGCCATTACATGAAGCCCAAAAACAACCCAGCAATGCATTTATGTCGAACAATAAACAGACTGGTCAAACGCAAAGCAACTTTGGCGAACAGCAAACTAATTTAGCACAGATAAACCCTCAGGAGGCTATCTACTCCCCTTTACAATCCGTGCACAATAACTTTGTTCCTGCTGACTACCATCAAACTCAAATTGCTAATTATTACCATTATGTGGCGCCTGGAAATCCTCGTGGATATATTCCTCAAGTGAACCCTGCTGTGCCACAAACTAACGACCAGCTGGGATATCAACAAATAACCAACTGGAGACCAGCCACTGCGTATCGTAATCCTTTACAATACAATACTTACAGTAATTACCTGCGAACATTAGGAAGACGGGGAGCGGGAAGGTCTTATGTAGAATACCTTAAAACCAAGAAGAATAAGTTAAAAAAGGGTAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P29120	Neuroendocrine convertase 1 OS=Homo sapiens OX=9606 GN=PCSK1 PE=1 SV=2
P28840	Neuroendocrine convertase 1 OS=Rattus norvegicus OX=10116 GN=Pcsk1 PE=2 SV=1
P63240	Neuroendocrine convertase 1 OS=Mus cookii OX=10098 GN=Pcsk1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000147 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16470 all species →	S8_pro-domain	Peptidase S8 pro-domain	Domain	Interproscan
PF00082 all species →	Peptidase_S8	Subtilase family	Domain	Interproscan
PF01483 all species →	P_proprotein	Proprotein convertase P-domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036852 all species →	Homologous_superfamily	Peptidase S8/S53 domain superfamily	Interproscan
IPR032815 all species →	Domain	Peptidase S8, pro-domain	Interproscan
IPR022398 all species →	Active_site	Peptidase S8, subtilisin, His-active site	Interproscan
IPR038466 all species →	Homologous_superfamily	Peptidase S8, pro-domain superfamily	Interproscan
IPR000209 all species →	Domain	Peptidase S8/S53 domain	Interproscan
IPR023828 all species →	Active_site	Peptidase S8, subtilisin, Ser-active site	Interproscan
IPR034182 all species →	Domain	Kexin/furin catalytic domain	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR023827 all species →	Active_site	Peptidase S8, subtilisin, Asp-active site	Interproscan
IPR002884 all species →	Domain	P domain	Interproscan
IPR015500 all species →	Family	Peptidase S8, subtilisin-related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42884 all species →	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004252 all species →	Molecular Function	serine-type endopeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016485 all species →	Biological Process	protein processing	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008236 all species →	Molecular Function	serine-type peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01359	PCSK1; proprotein convertase subtilisin/kexin type 1	EC:3.4.21.93	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.