Gene detail

Detailed information of evm.model.Ap1.1177 in Astrangia poculata

Genomic Location: Ap1:11747253...11764521
NR annotation: CAH3031907.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.1177

atgaatcgtctggtatttgaatcttttcctcgattcgcctgtaaatactgggcgtccaactttacgagagtgcccacaagactgttacataacccttcgagatattttggcaaccagcttttgtcaaatcgagcccctgttgaacaaagatgtgccaagtgcagtttgcgaagatattttggtagtataacgaagtcctcacagggggaattttcaacaaagtttattcatgctccatcattgtatcgaatctttctgctcctgaaaagagaagatgttagacagggtgtaaccagattcttttcaacaagtcaattgagacaacatgggcaaggagatcaacaccaacaaggtgacccacagaatcctgaagaagagccagaaaatcaaggagggtgggtgaccattctcccatggttgatgctggcattattctacttcttagcagcaggatctgaccccaccccagaaaccacatggtcaacattttatagagaaatgctttctataggcgaggtcgagcatttggaggtaccttcaagccaagacaaaatctttgtgtttttgcacaaaggagcaatggtaggaggaaaagagataatgagccatgggccacactttgtcttcagtattgccagcctggacagctttgaacaaaagatggcggctgctcaagctgacctgcgcatcgcatccaatgactttgtaccaataagatacaggaccaagaatgaactgctatctacagctctgaatgcagcagtaagcatagctttgttgggttttatctggtattggatttatggaagaggagcaaaaggtgcaacaaaacaaggagggatactaggaagcaatcctttttcaaactacatcaaagctaagccgacagtagtcatgcctggaagtggaaagggaattagcttcaaagatgttgcaggaatggaagaggcaaaacttgaggtgatggaatttgtggattacctcaagtcacctgcaagatatgcagagcttggagcaaaaatacccaagggagctctccttgttggtcctccaggcacaggcaagactctgctggccaaagctgtagctactgaggctgacgtgcccttccttaccatggctggatcagattttgtggaagtattttcaggtgttggatcagctagagtcagggacttgttcacccgtgccaggaagctggctccgtgtattttatacattgatgaagtggatgctattgggagatcccgatcatcaaattctattggtggtgggcacagtgagcaggaaagcactttgaatcagcttcttgtcgaaatggatggcatgaatactatggaaggtgttgtcatgctggcttccacaaacagacaggatattttagaccaggctcttttaaggccgggaagatttgaccgacacatcgccattgaacttcccaccttgatcgagcggcaagccatatttgaagtgcatctcaagaaactgactctgaaaatgccaattgggtctttctccaaacgactggcagaacttactccaggaaatagtggtgccgacatcgctaatatttgtaatgaagcagccctacacgcggcccgcttgaacaagaaagcagtggataagggaaactttgaatatgctgtggaacgagttatagctggtatggagaagaagactcatactatgtcacctgaagaacgaaaaatagtagcttttcacgaagctgggcatgctttggtcggctggatgttggaacacaccgaccctttgcttaaggtatccattgttcctcgcaccaatgctacgttaggttacgcgcagtatcttccctccgacaacaaactgtacagcactgaacagttgtttgatcgaatgtgcatggctctgggcggacgagccgccgaggccaagatattccggagagttactacaggagctgaagacgatcttcagaaagtgactgacttggcatataaacaggtcgttacgttcggtatgagctctcgtgttggtaatgtttcctttcctgtcaggaaaccgagtgagccgactaagaaattttacagtgataaactcgccaagcttatggatgaggaggttcgcatattaattgggaaggcatttcagacgactaatacaattatcgaggagaacttggacaaactgaacgctcttgctgaagaactcttaaccaaggaagttcttaactatgacgacattgtcacaatcctcggcccatgcccttttggcgacaagagagttcgtttccactcaccggaggcagcttcacagacccagtccctcttcagcggctga

Transcript

evm.model.Ap1.1177

ATGAATCGTCTGGTATTTGAATCTTTTCCTCGATTCGCCTGTAAATACTGGGCGTCCAACTTTACGAGAGTGCCCACAAGACTGTTACATAACCCTTCGAGATATTTTGGCAACCAGCTTTTGTCAAATCGAGCCCCTGTTGAACAAAGATGTGCCAAGTGCAGTTTGCGAAGATATTTTGGTAGTATAACGAAGTCCTCACAGGGGGAATTTTCAACAAAGTTTATTCATGCTCCATCATTGTATCGAATCTTTCTGCTCCTGAAAAGAGAAGATGTTAGACAGGGTGTAACCAGATTCTTTTCAACAAGTCAATTGAGACAACATGGGCAAGGAGATCAACACCAACAAGGTGACCCACAGAATCCTGAAGAAGAGCCAGAAAATCAAGGAGGGTGGGTGACCATTCTCCCATGGTTGATGCTGGCATTATTCTACTTCTTAGCAGCAGGATCTGACCCCACCCCAGAAACCACATGGTCAACATTTTATAGAGAAATGCTTTCTATAGGCGAGGTCGAGCATTTGGAGGTACCTTCAAGCCAAGACAAAATCTTTGTGTTTTTGCACAAAGGAGCAATGGTAGGAGGAAAAGAGATAATGAGCCATGGGCCACACTTTGTCTTCAGTATTGCCAGCCTGGACAGCTTTGAACAAAAGATGGCGGCTGCTCAAGCTGACCTGCGCATCGCATCCAATGACTTTGTACCAATAAGATACAGGACCAAGAATGAACTGCTATCTACAGCTCTGAATGCAGCAGTAAGCATAGCTTTGTTGGGTTTTATCTGGTATTGGATTTATGGAAGAGGAGCAAAAGGTGCAACAAAACAAGGAGGGATACTAGGAAGCAATCCTTTTTCAAACTACATCAAAGCTAAGCCGACAGTAGTCATGCCTGGAAGTGGAAAGGGAATTAGCTTCAAAGATGTTGCAGGAATGGAAGAGGCAAAACTTGAGGTGATGGAATTTGTGGATTACCTCAAGTCACCTGCAAGATATGCAGAGCTTGGAGCAAAAATACCCAAGGGAGCTCTCCTTGTTGGTCCTCCAGGCACAGGCAAGACTCTGCTGGCCAAAGCTGTAGCTACTGAGGCTGACGTGCCCTTCCTTACCATGGCTGGATCAGATTTTGTGGAAGTATTTTCAGGTGTTGGATCAGCTAGAGTCAGGGACTTGTTCACCCGTGCCAGGAAGCTGGCTCCGTGTATTTTATACATTGATGAAGTGGATGCTATTGGGAGATCCCGATCATCAAATTCTATTGGTGGTGGGCACAGTGAGCAGGAAAGCACTTTGAATCAGCTTCTTGTCGAAATGGATGGCATGAATACTATGGAAGGTGTTGTCATGCTGGCTTCCACAAACAGACAGGATATTTTAGACCAGGCTCTTTTAAGGCCGGGAAGATTTGACCGACACATCGCCATTGAACTTCCCACCTTGATCGAGCGGCAAGCCATATTTGAAGTGCATCTCAAGAAACTGACTCTGAAAATGCCAATTGGGTCTTTCTCCAAACGACTGGCAGAACTTACTCCAGGAAATAGTGGTGCCGACATCGCTAATATTTGTAATGAAGCAGCCCTACACGCGGCCCGCTTGAACAAGAAAGCAGTGGATAAGGGAAACTTTGAATATGCTGTGGAACGAGTTATAGCTGGTATGGAGAAGAAGACTCATACTATGTCACCTGAAGAACGAAAAATAGTAGCTTTTCACGAAGCTGGGCATGCTTTGGTCGGCTGGATGTTGGAACACACCGACCCTTTGCTTAAGGTATCCATTGTTCCTCGCACCAATGCTACGTTAGGTTACGCGCAGTATCTTCCCTCCGACAACAAACTGTACAGCACTGAACAGTTGTTTGATCGAATGTGCATGGCTCTGGGCGGACGAGCCGCCGAGGCCAAGATATTCCGGAGAGTTACTACAGGAGCTGAAGACGATCTTCAGAAAGTGACTGACTTGGCATATAAACAGGTCGTTACGTTCGGTATGAGCTCTCGTGTTGGTAATGTTTCCTTTCCTGTCAGGAAACCGAGTGAGCCGACTAAGAAATTTTACAGTGATAAACTCGCCAAGCTTATGGATGAGGAGGTTCGCATATTAATTGGGAAGGCATTTCAGACGACTAATACAATTATCGAGGAGAACTTGGACAAACTGAACGCTCTTGCTGAAGAACTCTTAACCAAGGAAGTTCTTAACTATGACGACATTGTCACAATCCTCGGCCCATGCCCTTTTGGCGACAAGAGAGTTCGTTTCCACTCACCGGAGGCAGCTTCACAGACCCAGTCCCTCTTCAGCGGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3ULF4	Mitochondrial inner membrane m-AAA protease component paraplegin OS=Mus musculus OX=10090 GN=Spg7 PE=1 SV=1
Q7TT47	Mitochondrial inner membrane m-AAA protease component paraplegin OS=Rattus norvegicus OX=10116 GN=Spg7 PE=2 SV=2
Q9UQ90	Mitochondrial inner membrane m-AAA protease component paraplegin OS=Homo sapiens OX=9606 GN=SPG7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001548 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01434 all species →	Peptidase_M41	Peptidase family M41	Domain	Interproscan
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005936 all species →	Family	ATP-dependent zinc metalloprotease, FtsH	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000642 all species →	Domain	Peptidase M41	Interproscan
IPR037219 all species →	Homologous_superfamily	Peptidase M41-like	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR050928 all species →	Family	ATP-dependent Zinc Metalloprotease	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43655 all species →	ATP-DEPENDENT PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005745 all species →	Cellular Component	m-AAA complex	Interproscan
GO:0034982 all species →	Biological Process	mitochondrial protein processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09552	SPG7; spastic paraplegia 7	EC:3.4.24.-	Chaperones and folding catalysts	ko03110	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.