Detailed information of evm.model.Ap1.1278 in Astrangia poculata

Genomic Location: Ap1:12541013...12545086
NR annotation: KAJ7365694.1, Paired box protein Pax-3 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P06601Segmentation protein paired OS=Drosophila melanogaster OX=7227 GN=prd PE=1 SV=1
Q0IH87Paired box protein Pax-3-B OS=Xenopus laevis OX=8355 GN=pax3-b PE=2 SV=2
P47239Paired box protein Pax-7 OS=Mus musculus OX=10090 GN=Pax7 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000410 (this species only)
Transcription factor familyHomeobox · all TF in this species
Transcription factor familyPAX · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00292
all species →		PAX'Paired box' domainDomainInterproscan
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001523
all species →		DomainPaired domainInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR043565
all species →		FamilyPAX familyInterproscan
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45636
all species →		PAIRED BOX PROTEIN PAX-6-RELATED-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0048856
all species →		Biological Processanatomical structure developmentInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.1278.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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