Gene detail

Detailed information of evm.model.Ap1.1292 in Astrangia poculata

Genomic Location: Ap1:12660281...12697642
NR annotation: XP_020625899.1, semaphorin-2A-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.1292

ctgtatttgtcaaatttattagttatggttttgttgaattgcacatttttacagaggaccacatcattcaatccgccaccatctgggatagatggaattggaataagtccatctagatatcagcaaacagttactggcaccttcacaagtgatcacttgtttactggaatcagtaatggaagatcagtcatttacaagtggattgcagaactgagcagcagtgctcttttgctacaatctgactcatctcctaatgttttacaagatgccgactttgtatcttcttttcatcacgaggacaactttgtttacttttttctgagagaaactgcagttgagactggtaaagttgtttattcacgggtagccagagtttgtcagtatgatgaaggtgctgaaagaagcctgaaaaacagattcacttcgttcgtgaagactagaatgttatgttctgttcctggaaaaattccattcgattacaatgaaattcaagcatttgctacaatcaaagatcctaagacaaatgaagactatgtttatggaatttttaccactccagagcttggagtccttggctcagctgtttgtatgtacagtatgaagtctgttaaaaaattgtttgatacaagccagtacttgaaagagacttccaacaaaggttttgatggttcttccttgtgggttgcagtatctccagtaaatttgacagtggttcctggtaggccaaagtgtgatgacaatcttaaaaccaagagttactcttgggaaaccattaagtttgcttctgaccataccctcttggctgatccacttatgccagaaccgctgttccaagcaagaaaacctctgtttaccagagctgaaacaagatttactcagcttgtggtggataatgtaaacagtggaaataaacaggttattcctgtcatgtttatttctacagataatggcacagtgttcaaagttttcaacaacatatctggtgatggcaatcctattattgtggagcagatcaaagtgtttgagaaaccagatccaatctatacaatgaaactatataagggagctgtgtacattggaagcagttctagtgttgtcaagctaccagtacagcactgtagtcattaccagagctgcagaacttgtgtttctgctctggatccctactgtggatggagcaacaagaagtgcaccacatttgacagcaagaaagcaagtgactgggctcaagacatcgttcatggaaacgtttctaaagtgtgtccacaagagcctccaacgtgtaccttgacagttacccgggagcaggtgggaggtgttagcagtttgatgtgccaaggagatggagtcccgcttccaaaagtgaccagttgggcaaaggattccaaacctcttcctgttgattcagacttccagatcaaacctggaaaatcaagtcaccaggagcagttggacatcaataattttggaatggcacaccttggggtctatgagtgttttgtgtctaacaaagtggggtcatccgcatgtgccatgaatatcagaggtacattacctgtcatcacatatgctctggtgaaaatcaatggcacatgtttgtttgtgtgtaatgctactgggctgcccagtccacatgttactatctacaaagtaatcggcgacactaagcacgtgatcatgtcataccacacacccatcagtgacgacacagggcagaggtcatactactgtgtggcacaaaatgactttggagtgtcatttagcaaacatgtcaacattaatgacaaacaagtcaaagctgagttgagacttacaaatgaagagtggagttcagagctctccgacaagacgtcagaaaaatataaagccctagcagatcgagtaaaaaatgcagtacaggaagtatattctaaaaatcctaccttcgtgaattttacagacattttattcagtaaagggagtgtagtatgtaaaatgacactgaattttgcggctgaaccttcaagcaagaatgatgacctgttgaaggatttacaagagaaagtgtcctccggtaaagtgggggacctcagcgtggatgtagattatattcttaatgtggagcctgatgttgaagtaagaactaccccacagcctaccccatcggtttttagtactgttctggtgagcctgaccaatggtagtgcccaaacgtctcaaaagacagaacctactccagcacaagatgtacaagattcaatggatgacagcctgtttgccgtggctgttgtgacagccgtgttgttaagtctaattctcgggtttgcactgggagtgaaatttcacggtcaggttataaaccgctgtaggccgtcatcacaagatccagaatcttgtgacgggccaaacaacagaactattgagggtgtaaagtataccaaatcaccacccagggatgagaacttcacgagaaacaagaacgaaacgcagagcaagagaaatctgctaaaaaagaaaggagcaaacattgatgaaacggaagagagtgatagtgattcctctactgctgggaagattggacaggagcaaggtggaaaacctagcagcacatcgagctcacctacaaagtcaatatcgccatcagtttctatcggcagatttgcaaaaaagaaaccgtctctggaaaatgggaaaatatcgaacaataaagcggctcctcgcttcagtaatgtaggcatgcatgaagtcggaaacgagctccgttgctaa

Transcript

evm.model.Ap1.1292

CTGTATTTGTCAAATTTATTAGTTATGGTTTTGTTGAATTGCACATTTTTACAGAGGACCACATCATTCAATCCGCCACCATCTGGGATAGATGGAATTGGAATAAGTCCATCTAGATATCAGCAAACAGTTACTGGCACCTTCACAAGTGATCACTTGTTTACTGGAATCAGTAATGGAAGATCAGTCATTTACAAGTGGATTGCAGAACTGAGCAGCAGTGCTCTTTTGCTACAATCTGACTCATCTCCTAATGTTTTACAAGATGCCGACTTTGTATCTTCTTTTCATCACGAGGACAACTTTGTTTACTTTTTTCTGAGAGAAACTGCAGTTGAGACTGGTAAAGTTGTTTATTCACGGGTAGCCAGAGTTTGTCAGTATGATGAAGGTGCTGAAAGAAGCCTGAAAAACAGATTCACTTCGTTCGTGAAGACTAGAATGTTATGTTCTGTTCCTGGAAAAATTCCATTCGATTACAATGAAATTCAAGCATTTGCTACAATCAAAGATCCTAAGACAAATGAAGACTATGTTTATGGAATTTTTACCACTCCAGAGCTTGGAGTCCTTGGCTCAGCTGTTTGTATGTACAGTATGAAGTCTGTTAAAAAATTGTTTGATACAAGCCAGTACTTGAAAGAGACTTCCAACAAAGGTTTTGATGGTTCTTCCTTGTGGGTTGCAGTATCTCCAGTAAATTTGACAGTGGTTCCTGGTAGGCCAAAGTGTGATGACAATCTTAAAACCAAGAGTTACTCTTGGGAAACCATTAAGTTTGCTTCTGACCATACCCTCTTGGCTGATCCACTTATGCCAGAACCGCTGTTCCAAGCAAGAAAACCTCTGTTTACCAGAGCTGAAACAAGATTTACTCAGCTTGTGGTGGATAATGTAAACAGTGGAAATAAACAGGTTATTCCTGTCATGTTTATTTCTACAGATAATGGCACAGTGTTCAAAGTTTTCAACAACATATCTGGTGATGGCAATCCTATTATTGTGGAGCAGATCAAAGTGTTTGAGAAACCAGATCCAATCTATACAATGAAACTATATAAGGGAGCTGTGTACATTGGAAGCAGTTCTAGTGTTGTCAAGCTACCAGTACAGCACTGTAGTCATTACCAGAGCTGCAGAACTTGTGTTTCTGCTCTGGATCCCTACTGTGGATGGAGCAACAAGAAGTGCACCACATTTGACAGCAAGAAAGCAAGTGACTGGGCTCAAGACATCGTTCATGGAAACGTTTCTAAAGTGTGTCCACAAGAGCCTCCAACGTGTACCTTGACAGTTACCCGGGAGCAGGTGGGAGGTGTTAGCAGTTTGATGTGCCAAGGAGATGGAGTCCCGCTTCCAAAAGTGACCAGTTGGGCAAAGGATTCCAAACCTCTTCCTGTTGATTCAGACTTCCAGATCAAACCTGGAAAATCAAGTCACCAGGAGCAGTTGGACATCAATAATTTTGGAATGGCACACCTTGGGGTCTATGAGTGTTTTGTGTCTAACAAAGTGGGGTCATCCGCATGTGCCATGAATATCAGAGGTACATTACCTGTCATCACATATGCTCTGGTGAAAATCAATGGCACATGTTTGTTTGTGTGTAATGCTACTGGGCTGCCCAGTCCACATGTTACTATCTACAAAGTAATCGGCGACACTAAGCACGTGATCATGTCATACCACACACCCATCAGTGACGACACAGGGCAGAGGTCATACTACTGTGTGGCACAAAATGACTTTGGAGTGTCATTTAGCAAACATGTCAACATTAATGACAAACAAGTCAAAGCTGAGTTGAGACTTACAAATGAAGAGTGGAGTTCAGAGCTCTCCGACAAGACGTCAGAAAAATATAAAGCCCTAGCAGATCGAGTAAAAAATGCAGTACAGGAAGTATATTCTAAAAATCCTACCTTCGTGAATTTTACAGACATTTTATTCAGTAAAGGGAGTGTAGTATGTAAAATGACACTGAATTTTGCGGCTGAACCTTCAAGCAAGAATGATGACCTGTTGAAGGATTTACAAGAGAAAGTGTCCTCCGGTAAAGTGGGGGACCTCAGCGTGGATGTAGATTATATTCTTAATGTGGAGCCTGATGTTGAAGTAAGAACTACCCCACAGCCTACCCCATCGGTTTTTAGTACTGTTCTGGTGAGCCTGACCAATGGTAGTGCCCAAACGTCTCAAAAGACAGAACCTACTCCAGCACAAGATGTACAAGATTCAATGGATGACAGCCTGTTTGCCGTGGCTGTTGTGACAGCCGTGTTGTTAAGTCTAATTCTCGGGTTTGCACTGGGAGTGAAATTTCACGGTCAGGTTATAAACCGCTGTAGGCCGTCATCACAAGATCCAGAATCTTGTGACGGGCCAAACAACAGAACTATTGAGGGTGTAAAGTATACCAAATCACCACCCAGGGATGAGAACTTCACGAGAAACAAGAACGAAACGCAGAGCAAGAGAAATCTGCTAAAAAAGAAAGGAGCAAACATTGATGAAACGGAAGAGAGTGATAGTGATTCCTCTACTGCTGGGAAGATTGGACAGGAGCAAGGTGGAAAACCTAGCAGCACATCGAGCTCACCTACAAAGTCAATATCGCCATCAGTTTCTATCGGCAGATTTGCAAAAAAGAAACCGTCTCTGGAAAATGGGAAAATATCGAACAATAAAGCGGCTCCTCGCTTCAGTAATGTAGGCATGCATGAAGTCGGAAACGAGCTCCGTTGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q90665	Semaphorin-4D (Fragment) OS=Gallus gallus OX=9031 GN=SEMA4D PE=2 SV=1
Q26473	Semaphorin-1A OS=Schistocerca americana OX=7009 GN=SEMA-1A PE=1 SV=1
Q26972	Semaphorin-1A OS=Tribolium confusum OX=7071 GN=SEMA-1A PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002518 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01390 all species →	SEA	SEA domain	Family	Interproscan
PF07679 all species →	I-set	Immunoglobulin I-set domain	Domain	Interproscan
PF01403 all species →	Sema	Sema domain	Repeat	Interproscan
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000082 all species →	Domain	SEA domain	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR036352 all species →	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR001627 all species →	Domain	Sema domain	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR013098 all species →	Domain	Immunoglobulin I-set	Interproscan
IPR027231 all species →	Family	Semaphorin	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036364 all species →	Homologous_superfamily	SEA domain superfamily	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036 all species →	SEMAPHORIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0001755 all species →	Biological Process	neural crest cell migration	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007411 all species →	Biological Process	axon guidance	Interproscan
GO:0030215 all species →	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335 all species →	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499 all species →	Molecular Function	chemorepellent activity	Interproscan
GO:0048843 all species →	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919 all species →	Biological Process	negative chemotaxis	Interproscan
GO:0071526 all species →	Biological Process	semaphorin-plexin signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.1292.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.