Gene detail

Detailed information of evm.model.Ap1.1344.1.5f168cd5 in Astrangia poculata

Genomic Location: Ap1:13378135...13468213
NR annotation: XP_020625960.1, nuclear cap-binding protein subunit 1-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DIE2	Nuclear cap-binding protein subunit 1 OS=Xenopus tropicalis OX=8364 GN=ncbp1 PE=2 SV=1
Q5ZJZ6	Nuclear cap-binding protein subunit 1 OS=Gallus gallus OX=9031 GN=NCBP1 PE=2 SV=1
Q6GQ80	Nuclear cap-binding protein subunit 1-A OS=Xenopus laevis OX=8355 GN=ncbp1-a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003799 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02854 all species →	MIF4G	MIF4G domain	Repeat	Interproscan
PF09090 all species →	MIF4G_like_2	MIF4G like	Repeat	Interproscan
PF09088 all species →	MIF4G_like	MIF4G like	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003890 all species →	Domain	MIF4G-like, type 3	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR027159 all species →	Family	Nuclear cap-binding protein subunit 1	Interproscan
IPR015174 all species →	Domain	MIF4G-like, type 2	Interproscan
IPR015172 all species →	Domain	MIF4G-like, type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12412 all species →	CAP BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0000339 all species →	Molecular Function	RNA cap binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005845 all species →	Cellular Component	obsolete mRNA cap binding complex	Interproscan
GO:0005846 all species →	Cellular Component	nuclear cap binding complex	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0016070 all species →	Biological Process	RNA metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.1344.1.5f168cd5.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.