Gene detail

Detailed information of evm.model.Ap1.1347 in Astrangia poculata

Genomic Location: Ap1:13475251...13488593
NR annotation: XP_020625963.1, uncharacterized protein LOC110063330 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q01WB8	Small ribosomal subunit protein uS11 OS=Solibacter usitatus (strain Ellin6076) OX=234267 GN=rpsK PE=3 SV=1
A0T0Z3	Small ribosomal subunit protein uS11c OS=Thalassiosira pseudonana OX=35128 GN=rps11 PE=3 SV=1
C3P9T1	Small ribosomal subunit protein uS11 OS=Bacillus anthracis (strain A0248) OX=592021 GN=rpsK PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005576 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00411 all species →	Ribosomal_S11	Ribosomal protein S11	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036967 all species →	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan
IPR001971 all species →	Family	Small ribosomal subunit protein uS11	Interproscan
IPR018102 all species →	Conserved_site	Small ribosomal subunit protein uS11, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11759 all species →	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan
GO:0005763 all species →	Cellular Component	mitochondrial small ribosomal subunit	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02948	RP-S11, MRPS11, rpsK; small subunit ribosomal protein S11	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.