Genomic Location: Ap1:14276526...14297153
NR annotation: XP_020600877.1, GON-4-like protein [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.1416 |
| Transcript |
| evm.model.Ap1.1416 |
| Protein |
| evm.model.Ap1.1416 |
| UniProt accession | Description |
|---|---|
| Q3T8J9 | GON-4-like protein OS=Homo sapiens OX=9606 GN=GON4L PE=1 SV=1 |
| Q535K8 | GON-4-like protein OS=Rattus norvegicus OX=10116 GN=Gon4l PE=1 SV=1 |
| Q9DB00 | GON-4-like protein OS=Mus musculus OX=10090 GN=Gon4l PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003296 (this species only) |
| Transcription factor family | MYB · all TF in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF13921 all species → | Myb_DNA-bind_6 | Myb-like DNA-binding domain | Domain | Interproscan |
| PF21227 all species → | Myb_DNA-binding_7 | Myb-like DNA-binding domain | Domain | Interproscan |
| PF02671 all species → | PAH | Paired amphipathic helix repeat | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036600 all species → | Homologous_superfamily | Paired amphipathic helix superfamily | Interproscan |
| IPR052435 all species → | Family | YY1-Associated Transcriptional Regulator | Interproscan |
| IPR009057 all species → | Homologous_superfamily | Homeobox-like domain superfamily | Interproscan |
| IPR003822 all species → | Repeat | Paired amphipathic helix | Interproscan |
| IPR001005 all species → | Domain | SANT/Myb domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR16088 all species → | YY1 ASSOCIATED PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0006355 all species → | Biological Process | regulation of DNA-templated transcription | Interproscan |
| GO:0003712 all species → | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23804 | GON4L; GON-4-like protein | - | Transcription factors | ko03000 | deepkoala |
Transcript abundance of evm.model.Ap1.1416 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
