Genomic Location: Ap1:14889438...14908948
NR annotation: KAJ7365862.1, Cytosolic carboxypeptidase 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.1474 |
| Transcript |
| evm.model.Ap1.1474 |
| Protein |
| evm.model.Ap1.1474 |
| UniProt accession | Description |
|---|---|
| Q641K1 | Cytosolic carboxypeptidase 1 OS=Mus musculus OX=10090 GN=Agtpbp1 PE=1 SV=2 |
| Q4U2V3 | Cytosolic carboxypeptidase 1 OS=Danio rerio OX=7955 GN=agtpbp1 PE=2 SV=1 |
| Q9UPW5 | Cytosolic carboxypeptidase 1 OS=Homo sapiens OX=9606 GN=AGTPBP1 PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003584 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF18027 all species → | Pepdidase_M14_N | Cytosolic carboxypeptidase N-terminal domain | Domain | Interproscan |
| PF00246 all species → | Peptidase_M14 | Zinc carboxypeptidase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR033852 all species → | Domain | Cytosolic aminopeptidase 1/4 | Interproscan |
| IPR050821 all species → | Family | Cytosolic carboxypeptidase | Interproscan |
| IPR040626 all species → | Domain | Cytosolic carboxypeptidase, N-terminal | Interproscan |
| IPR000834 all species → | Domain | Peptidase M14, carboxypeptidase A | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12756 all species → | CYTOSOLIC CARBOXYPEPTIDASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004181 all species → | Molecular Function | metallocarboxypeptidase activity | Interproscan |
| GO:0035610 all species → | Biological Process | protein side chain deglutamylation | Interproscan |
| GO:0006508 all species → | Biological Process | proteolysis | Interproscan |
| GO:0008270 all species → | Molecular Function | zinc ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23435 | AGTPBP1, CCP1; cytosolic carboxypeptidase protein 1 | EC:3.4.17.24 | Peptidases and inhibitors | ko01002 | deepkoala |
Transcript abundance of evm.model.Ap1.1474 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
