Gene detail

Detailed information of evm.model.Ap1.15 in Astrangia poculata

Genomic Location: Ap1:140255...150782
NR annotation: XP_020615174.1, ubiquitin-associated protein 2-like isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap1.15

atgaaaggaggaacggcagtaccaacatcacaaaccaaacacacagacggtatgactactaaaaagcctactgcagaacaaatcagatatgcccagcttttaaatacagaagattccaaagcaatgaaagacaaaatcaagcaggtgtctgatgtgacaggttttaattacgacactgtgagcattgctcttcatgattgtaattttgacactgaagctgcaattaatgctctattggaaggacgacaagatcagactgaatgggttatgagaacaaacaaaaagaagaaacatcaaactcctgtcactcaaggcatagatacaatcatccccacatcacagacaacaccaccaacgactacagcaccaacatcatctaaaccaggagggccgcgacagcctagaggaaaagggaggagtagacagtccgaagagcacaaaaacagttcagaaaaagataataagaatgaaggaacagttaacaacaatgacagaaatgctggagagagtggacgtggaagaggctcaagggaggatagatggaatgatcgcaaacctggtggcagaagtggcccaccaaggaggggtggaagaggaggtggcaggccagggagatcattccaatctcgtggtcgagatcgacccaacagatttggtggaggaaacagaaatgcttcaaattccacagccgtaaatggaccatcagtgaatggtactgagatgtggggagataatgaagatgacatttcaaaagagaaggagacagaacacacaggagatctaataccaccaacgactgaagagtggggaattgaagaatggactccagtggaacagtcagtaacatcaagcacagatgatacgttgtttaacaatgcagtttcatcctcgcattcctggccaacaaactccgacagctctgtagtctcatgggatgtggacacacagtcagtcagtaactcgacagaccctacagcatcaactacagacagtagacagaaggttcctgagaatactgctcactttacaccagagagtgttgacatggcaataatacattccaaacttgcttcaagtcaacctacaagtaaagatcagtattctgcagttgagttctctatgcctcgcattccacttcctggagagctgcatggtatacgtaaccatcaagactcactcagtaagctctttgacaaagtcaatctgtcttcatctattggtgtgtcacctcagaattctttggcaacagttcaagctcagcctcaaagacagccacggacaagcagaacaaagaagtcacaaaaaagccaaattcctgttcaagctgtggagatgcctggatcaatgaatgacagtcttgatgttcaatttggaaatttggagtttggtggtgattctgtcagtagcccacggaaaaaggaggagttccctgcacctctgcctgaagtagaagacagcagatctgatgagcaaagttcaaccactagcagtgagtcaccaagtccaccattggaaacacagcatgtcgtgacaagtctgtcgtcctctcctatggccacacccattaccatagcaaccactgcatcagcttcagcaagtgtgacaacattagaggatagttcaccgcggcacttccagcacccgtcacctcgagcacaacaacagcctcttgtgcctcaagtaactaagcaaatcacaccagagccaatcccactgcctcctcagctggattcaagagagaattccattcccaccaagccacaactctctactgatcaacagagttcagccagtcttcaacagtctggtattccatcgccttctctgagtgggacaaatctcaaccaagctggttcttcatcaccattgagaccagcactgtcttccacgatgcagaaagatatcactctagaaacaagagcttatcagaaacatcatgtgacccagccaacagtgccatcaacaaaagataagcttggtaccagttcactaagcagctctgtcgtgtccaccagtgttcccaggaatgatctgtcctctgttgaaccacttcagcctccacctggggtgtctgtgcctctcacaatgaatcagcctactagctctacatcatctggcttcacttcagtcaccatgtcaggcacaggcaaaccagtgtcacacactaccaaaccgtcattacctccaggagtattgccactgaacactctttatggcatgcagcaaggccttattcatgcttatcccctgccatatggctatgaagatcttcagaggttaccaatgtctccttactatgacatgcctgctttccaggcagctggaagagaaggcctgtctacaacatttcatggtgatcagaagtttggacgcaccgatgcatcatctccagttccaacatctttaaaccagactgtgacacttccacaggcacatctgcaacagcaagcctacattaatgctacgacaatgccacacccttatggttacggtggactagcattttaccctggagctggtatgatggctgggggcttccctgcttacaccacgcccatgtatcagatgccaaccaaaacacatgggaatgcttctcaataccaatcagcttacacctcaggtcaacatggaactcataattttgcatcaggatacgacgatttaggtcagagtcatgactttggaaagtctggttaccatacgtcagtttccccatcacaaagcaagtctaatgcaggtgcagttgtaagcagtgcttcagatctgtctggagcttcttataagcctcaagttggaaagttcaatgaaaacaaaccattcattggtggtacacctccaccaccggcgttaaatctttccatgactggacaacatggtccattgagcagctatcctcatacaggacaccccttcatgtcgatgatgacccctgtccagcaacaccacccgccgtcccactaccatcaccacatggcccatcatatggaagcaggccagcctggaacatcccagagagggtctcaagtacaggggcctaaacagggacaaaataaaggtcatcaaggtggctaccaaggatcgcctttctggtctggaacaaattga

Transcript

evm.model.Ap1.15

ATGAAAGGAGGAACGGCAGTACCAACATCACAAACCAAACACACAGACGGTATGACTACTAAAAAGCCTACTGCAGAACAAATCAGATATGCCCAGCTTTTAAATACAGAAGATTCCAAAGCAATGAAAGACAAAATCAAGCAGGTGTCTGATGTGACAGGTTTTAATTACGACACTGTGAGCATTGCTCTTCATGATTGTAATTTTGACACTGAAGCTGCAATTAATGCTCTATTGGAAGGACGACAAGATCAGACTGAATGGGTTATGAGAACAAACAAAAAGAAGAAACATCAAACTCCTGTCACTCAAGGCATAGATACAATCATCCCCACATCACAGACAACACCACCAACGACTACAGCACCAACATCATCTAAACCAGGAGGGCCGCGACAGCCTAGAGGAAAAGGGAGGAGTAGACAGTCCGAAGAGCACAAAAACAGTTCAGAAAAAGATAATAAGAATGAAGGAACAGTTAACAACAATGACAGAAATGCTGGAGAGAGTGGACGTGGAAGAGGCTCAAGGGAGGATAGATGGAATGATCGCAAACCTGGTGGCAGAAGTGGCCCACCAAGGAGGGGTGGAAGAGGAGGTGGCAGGCCAGGGAGATCATTCCAATCTCGTGGTCGAGATCGACCCAACAGATTTGGTGGAGGAAACAGAAATGCTTCAAATTCCACAGCCGTAAATGGACCATCAGTGAATGGTACTGAGATGTGGGGAGATAATGAAGATGACATTTCAAAAGAGAAGGAGACAGAACACACAGGAGATCTAATACCACCAACGACTGAAGAGTGGGGAATTGAAGAATGGACTCCAGTGGAACAGTCAGTAACATCAAGCACAGATGATACGTTGTTTAACAATGCAGTTTCATCCTCGCATTCCTGGCCAACAAACTCCGACAGCTCTGTAGTCTCATGGGATGTGGACACACAGTCAGTCAGTAACTCGACAGACCCTACAGCATCAACTACAGACAGTAGACAGAAGGTTCCTGAGAATACTGCTCACTTTACACCAGAGAGTGTTGACATGGCAATAATACATTCCAAACTTGCTTCAAGTCAACCTACAAGTAAAGATCAGTATTCTGCAGTTGAGTTCTCTATGCCTCGCATTCCACTTCCTGGAGAGCTGCATGGTATACGTAACCATCAAGACTCACTCAGTAAGCTCTTTGACAAAGTCAATCTGTCTTCATCTATTGGTGTGTCACCTCAGAATTCTTTGGCAACAGTTCAAGCTCAGCCTCAAAGACAGCCACGGACAAGCAGAACAAAGAAGTCACAAAAAAGCCAAATTCCTGTTCAAGCTGTGGAGATGCCTGGATCAATGAATGACAGTCTTGATGTTCAATTTGGAAATTTGGAGTTTGGTGGTGATTCTGTCAGTAGCCCACGGAAAAAGGAGGAGTTCCCTGCACCTCTGCCTGAAGTAGAAGACAGCAGATCTGATGAGCAAAGTTCAACCACTAGCAGTGAGTCACCAAGTCCACCATTGGAAACACAGCATGTCGTGACAAGTCTGTCGTCCTCTCCTATGGCCACACCCATTACCATAGCAACCACTGCATCAGCTTCAGCAAGTGTGACAACATTAGAGGATAGTTCACCGCGGCACTTCCAGCACCCGTCACCTCGAGCACAACAACAGCCTCTTGTGCCTCAAGTAACTAAGCAAATCACACCAGAGCCAATCCCACTGCCTCCTCAGCTGGATTCAAGAGAGAATTCCATTCCCACCAAGCCACAACTCTCTACTGATCAACAGAGTTCAGCCAGTCTTCAACAGTCTGGTATTCCATCGCCTTCTCTGAGTGGGACAAATCTCAACCAAGCTGGTTCTTCATCACCATTGAGACCAGCACTGTCTTCCACGATGCAGAAAGATATCACTCTAGAAACAAGAGCTTATCAGAAACATCATGTGACCCAGCCAACAGTGCCATCAACAAAAGATAAGCTTGGTACCAGTTCACTAAGCAGCTCTGTCGTGTCCACCAGTGTTCCCAGGAATGATCTGTCCTCTGTTGAACCACTTCAGCCTCCACCTGGGGTGTCTGTGCCTCTCACAATGAATCAGCCTACTAGCTCTACATCATCTGGCTTCACTTCAGTCACCATGTCAGGCACAGGCAAACCAGTGTCACACACTACCAAACCGTCATTACCTCCAGGAGTATTGCCACTGAACACTCTTTATGGCATGCAGCAAGGCCTTATTCATGCTTATCCCCTGCCATATGGCTATGAAGATCTTCAGAGGTTACCAATGTCTCCTTACTATGACATGCCTGCTTTCCAGGCAGCTGGAAGAGAAGGCCTGTCTACAACATTTCATGGTGATCAGAAGTTTGGACGCACCGATGCATCATCTCCAGTTCCAACATCTTTAAACCAGACTGTGACACTTCCACAGGCACATCTGCAACAGCAAGCCTACATTAATGCTACGACAATGCCACACCCTTATGGTTACGGTGGACTAGCATTTTACCCTGGAGCTGGTATGATGGCTGGGGGCTTCCCTGCTTACACCACGCCCATGTATCAGATGCCAACCAAAACACATGGGAATGCTTCTCAATACCAATCAGCTTACACCTCAGGTCAACATGGAACTCATAATTTTGCATCAGGATACGACGATTTAGGTCAGAGTCATGACTTTGGAAAGTCTGGTTACCATACGTCAGTTTCCCCATCACAAAGCAAGTCTAATGCAGGTGCAGTTGTAAGCAGTGCTTCAGATCTGTCTGGAGCTTCTTATAAGCCTCAAGTTGGAAAGTTCAATGAAAACAAACCATTCATTGGTGGTACACCTCCACCACCGGCGTTAAATCTTTCCATGACTGGACAACATGGTCCATTGAGCAGCTATCCTCATACAGGACACCCCTTCATGTCGATGATGACCCCTGTCCAGCAACACCACCCGCCGTCCCACTACCATCACCACATGGCCCATCATATGGAAGCAGGCCAGCCTGGAACATCCCAGAGAGGGTCTCAAGTACAGGGGCCTAAACAGGGACAAAATAAAGGTCATCAAGGTGGCTACCAAGGATCGCCTTTCTGGTCTGGAACAAATTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005638 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12478 all species →	UBAP2-Lig	UBAP2/protein lingerer	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051833 all species →	Family	Transcription-coupled DNA damage response regulator	Interproscan
IPR022166 all species →	Family	UBAP2/protein lingerer	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16308 all species →	UBIQUITIN ASSOCIATED PROTEIN 2-LIKE/LINGERER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.15.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.