Detailed information of evm.model.Ap1.1558 in Astrangia poculata

Genomic Location: Ap1:15833737...15834336
NR annotation: XP_020632846.1, uncharacterized protein LOC110069656 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000457 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04665
all species →		Pox_A32Poxvirus A32 proteinDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR006758
all species →		FamilyPoxvirus A32Interproscan

 PANTHER
No PANTHER signature was recorded for evm.model.Ap1.1558 in Astrangia poculata.
 Gene Ontology
No Gene Ontology signature was recorded for evm.model.Ap1.1558 in Astrangia poculata.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap1.1558.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap1.1558 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
44TPM > 0
4Conditions
2,563.8Max TPM
544.6Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 13 584.51 1,653.00
whole organism · heat control 12 11 441.76 1,097.30
whole organism · cold challenge 12 11 386.90 1,453.32
whole organism · heat challenge 11 9 777.99 2,563.75

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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