Genomic Location: Ap1:15987801...16007163
NR annotation: XP_020603181.1, DNA polymerase subunit gamma-1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.1575 |
| Transcript |
| evm.model.Ap1.1575 |
| Protein |
| evm.model.Ap1.1575 |
| UniProt accession | Description |
|---|---|
| Q9QYV8 | DNA polymerase subunit gamma-1 OS=Rattus norvegicus OX=10116 GN=Polg PE=2 SV=1 |
| P54098 | DNA polymerase subunit gamma-1 OS=Homo sapiens OX=9606 GN=POLG PE=1 SV=1 |
| P54099 | DNA polymerase subunit gamma-1 OS=Mus musculus OX=10090 GN=Polg PE=1 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002983 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00476 all species → | DNA_pol_A | DNA polymerase family A | Family | Interproscan |
| PF18136 all species → | DNApol_Exo | DNA mitochondrial polymerase exonuclease domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001098 all species → | Domain | DNA-directed DNA polymerase, family A, palm domain | Interproscan |
| IPR047580 all species → | Domain | DNA polymerase gamma, palm domain | Interproscan |
| IPR002297 all species → | Family | DNA-directed DNA-polymerase, family A, mitochondria | Interproscan |
| IPR019760 all species → | Conserved_site | DNA-directed DNA polymerase, family A, conserved site | Interproscan |
| IPR012337 all species → | Homologous_superfamily | Ribonuclease H-like superfamily | Interproscan |
| IPR043502 all species → | Homologous_superfamily | DNA/RNA polymerase superfamily | Interproscan |
| IPR041336 all species → | Domain | DNA mitochondrial polymerase, exonuclease domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10267 all species → | DNA POLYMERASE SUBUNIT GAMMA-1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0003887 all species → | Molecular Function | DNA-directed DNA polymerase activity | Interproscan |
| GO:0006260 all species → | Biological Process | DNA replication | Interproscan |
| GO:0006264 all species → | Biological Process | mitochondrial DNA replication | Interproscan |
| GO:0005760 all species → | Cellular Component | gamma DNA polymerase complex | Interproscan |
| GO:0005739 all species → | Cellular Component | mitochondrion | Interproscan |
| GO:0008408 all species → | Molecular Function | 3'-5' exonuclease activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02332 | POLG; DNA polymerase gamma 1 | EC:2.7.7.7 | Mitochondrial biogenesis | ko03029 | deepkoala |
Transcript abundance of evm.model.Ap1.1575 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
