Gene detail

Detailed information of evm.model.Ap1.1582 in Astrangia poculata

Genomic Location: Ap1:16067938...16073917
NR annotation: XP_027048120.1, probable 39S ribosomal protein L24, mitochondrial [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GPM4	Large ribosomal subunit protein uL24m OS=Xenopus laevis OX=8355 GN=mrpl24 PE=2 SV=1
Q6DH02	Large ribosomal subunit protein uL24m OS=Danio rerio OX=7955 GN=mrpl24 PE=2 SV=1
Q3SYS0	Large ribosomal subunit protein uL24m OS=Bos taurus OX=9913 GN=MRPL24 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006770 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00467 all species →	KOW	KOW motif	Family	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan
PF17136 all species →	ribosomal_L24	Ribosomal proteins 50S L24/mitochondrial 39S L24	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan
IPR005824 all species →	Domain	KOW	Interproscan
IPR041988 all species →	Domain	Large ribosomal subunit protein uL24, KOW domain	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR003256 all species →	Family	Large ribosomal subunit protein uL24	Interproscan
IPR008991 all species →	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12903 all species →	MITOCHONDRIAL RIBOSOMAL PROTEIN L24	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap1.1582.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.