Genomic Location: Ap1:16501069...16509516
NR annotation: KAJ7390519.1, hypothetical protein OS493_024551 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap1.1618 |
| Transcript |
| evm.model.Ap1.1618 |
| Protein |
| evm.model.Ap1.1618 |
| UniProt accession | Description |
|---|---|
| Q9BVW5 | TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2 |
| Q3ZCC4 | TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1 |
| Q91WA1 | TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006951 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07962 all species → | Swi3 | Replication Fork Protection Component Swi3 | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012923 all species → | Domain | Chromosome segregation in meiosis protein 3 | Interproscan |
| IPR040038 all species → | Family | TIPIN/Csm3/Swi3 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13220 all species → | TIMELESS INTERACTING-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0006974 all species → | Biological Process | DNA damage response | Interproscan |
| GO:0031297 all species → | Biological Process | replication fork processing | Interproscan |
| GO:0000076 all species → | Biological Process | DNA replication checkpoint signaling | Interproscan |
| GO:0003677 all species → | Molecular Function | DNA binding | Interproscan |
| GO:0031298 all species → | Cellular Component | replication fork protection complex | Interproscan |
| GO:0043111 all species → | Biological Process | replication fork arrest | Interproscan |
| GO:0048478 all species → | Biological Process | obsolete replication fork protection | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K10998 | TIPIN, CSM3, SWI3; replication fork protection complex subunit TIPIN/Csm3/Swi3 | - | DNA repair and recombination proteins | ko03400 | deepkoala |
Transcript abundance of evm.model.Ap1.1618 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
